Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1674
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 230 1e-61
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 111 1e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 95 8e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 8e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 91 2e-19
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 64 2e-11
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 63 3e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 60 2e-10
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.4
SPBP23A10.03c |||ACN9 family mitochondrial protein|Schizosacchar... 27 2.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.7
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.7
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 7.5
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 230 bits (563), Expect = 1e-61
Identities = 107/128 (83%), Positives = 114/128 (89%)
Frame = -2
Query: 659 TIGNKRFPLPRGFSFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 480
TIGN+RF P FQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYP
Sbjct: 249 TIGNERFRAPEAL-FQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYP 307
Query: 479 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 300
GIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP
Sbjct: 308 GIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 367
Query: 299 SIVHRKCF 276
IV+RKCF
Sbjct: 368 GIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 111 bits (266), Expect = 1e-25
Identities = 52/128 (40%), Positives = 83/128 (64%)
Frame = -2
Query: 659 TIGNKRFPLPRGFSFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 480
T+G + F P F P +G EA G+H + SI+ D+D+R LY+N VLSGG+T+
Sbjct: 254 TLGTECFSAPEVL-FNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLR 312
Query: 479 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 300
G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++
Sbjct: 313 GFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQ 371
Query: 299 SIVHRKCF 276
+++ R+ F
Sbjct: 372 NVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 95.1 bits (226), Expect = 8e-21
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = -2
Query: 584 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII- 411
G+HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382
Query: 410 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 303
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 8e-21
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -2
Query: 584 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 405
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 404 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 279
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 90.6 bits (215), Expect = 2e-19
Identities = 51/130 (39%), Positives = 79/130 (60%), Gaps = 12/130 (9%)
Frame = -2
Query: 656 IGNKRFPLPRGFSFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 477
+G++R+ P FQP +G E G+ E +++I DVDIRK LY VLSGG++MY G
Sbjct: 250 VGSERYECPECL-FQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAG 308
Query: 476 IADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMW 333
+ R++KEI L P+ + K+KI P R+++V+IGG++LA ++ MW
Sbjct: 309 LPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMW 368
Query: 332 ISKQEYDESG 303
+SK E++E G
Sbjct: 369 VSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 64.1 bits (149), Expect = 2e-11
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 15/139 (10%)
Frame = -2
Query: 656 IGNKRFPLPRGFSFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 480
+G +RF P F F P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 282 VGFERFLAPEIF-FNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFK 340
Query: 479 GIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTFQ 342
+R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 341 NFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFG 400
Query: 341 QMWISKQEYDESGPSIVHR 285
+K +Y+E G SI R
Sbjct: 401 SYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 63.3 bits (147), Expect = 3e-11
Identities = 37/125 (29%), Positives = 60/125 (48%)
Frame = -2
Query: 656 IGNKRFPLPRGFSFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 477
+ N+RF +P F PS + + GI E S+ +I+ L N V GG +PG
Sbjct: 276 LSNERFMIPE-LLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPG 334
Query: 476 IADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPS 297
R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G +
Sbjct: 335 FHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGAN 393
Query: 296 IVHRK 282
I+ RK
Sbjct: 394 IMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 60.5 bits (140), Expect = 2e-10
Identities = 27/109 (24%), Positives = 56/109 (51%)
Frame = -2
Query: 617 FQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA 438
F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R+++E+T++
Sbjct: 603 FSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIM 662
Query: 437 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 291
P I + W G S + F+ ++++EY E GP +
Sbjct: 663 PVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 530 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 360
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 359 SLSTFQQMWISKQEYDESGPSIVHRK 282
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 383 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 282
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBP23A10.03c |||ACN9 family mitochondrial
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 115
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 565 YVVSWMPQASIPKNEGWKEKPLGNGNLLFPIVDE 666
++ SW A +NE WK++ N +LL + D+
Sbjct: 63 FLSSWERYADALENESWKQEKYSNTDLLESLNDQ 96
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 391 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 296
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 458 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 348
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 501 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 322
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 321 GV 316
V
Sbjct: 534 AV 535
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 324 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 410
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,281
Number of Sequences: 5004
Number of extensions: 55705
Number of successful extensions: 159
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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