Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1671
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   2.7  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   2.7  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   3.6  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   8.4  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +3

Query: 354 QKLRKENERCALKGWRDECFEVSTAFYQESLLEMDRSAICLFGIRNY 494
           QKL + N   +++  RD   E S A   E L ++  S+IC  G RNY
Sbjct: 303 QKLAQINLAVSIRSMRDIFREESCAVLLEWLADIAGSSIC--GKRNY 347


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 205 WASSWSCPT*CFKIFAAFPRGV 270
           W S WS P  C +++  FP G+
Sbjct: 30  WVSLWSVPESCPEVYDFFPPGL 51


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 13  VCFPYFRICRPLLKVETIYYMKENYERYEFSTKQ 114
           VC  Y+RIC   +KV      K++Y RY  ST++
Sbjct: 185 VCIQYYRICDRRVKVN----FKDDYTRY-LSTRK 213


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 291 LELNPAFRDYKERTTRVADVLQKL 362
           +++NPAFR+Y  R+ R  +++Q L
Sbjct: 270 MQVNPAFREY--RSNRPVEIVQYL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,765
Number of Sequences: 5004
Number of extensions: 40517
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)