Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1671
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0826 - 7629892-7629964,7630052-7630135,7630216-7630314,763...    30   0.90 
04_01_0160 + 1830671-1830779,1830898-1830971,1831374-1831671,183...    27   6.3  
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197...    27   8.4  

>12_01_0826 -
           7629892-7629964,7630052-7630135,7630216-7630314,
           7630391-7630449,7630804-7630888,7630961-7631058,
           7631209-7631355,7631433-7631525,7631642-7631770,
           7631859-7631912,7632133-7632309,7632396-7632481,
           7634234-7634324,7634433-7634531,7634618-7634694,
           7634784-7634952,7639551-7639642,7639712-7639825,
           7640933-7641038,7641133-7641183,7641315-7641416,
           7642581-7642655,7642768-7642965,7642998-7643123
          Length = 827

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 270 SKSPGNMLELNPAFRDYKERTTRVADVLQKLR 365
           + +PG+++EL+P F D   R    A + QKLR
Sbjct: 190 NSTPGDLMELSPLFSD-DSRVAEAASIAQKLR 220


>04_01_0160 +
           1830671-1830779,1830898-1830971,1831374-1831671,
           1831900-1832867,1833504-1833716,1834034-1834237,
           1835063-1835104
          Length = 635

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 291 LELNPAFRDYKERTTRVADVLQKLRKENERCALKG 395
           L++   F+DY + T+ + D      KE+ RCA KG
Sbjct: 561 LKMLKIFKDYDQETSLLDDFNFYEEKESARCAKKG 595


>06_01_0267 -
           1972988-1973148,1973275-1973403,1973881-1974024,
           1974368-1974493,1974595-1974720,1975149-1975241,
           1975465-1975606,1976747-1976878,1976943-1977080,
           1977431-1977523,1978186-1978389,1978568-1978656,
           1978839-1978988,1979088-1979253,1979355-1979576,
           1979687-1979872,1980289-1980411,1980511-1980611,
           1982005-1982155
          Length = 891

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = +3

Query: 285 NMLELNPAFRDYKERTTRVADVLQKLRKENERCALKGWRDECFEVSTAFYQESLLEMDR 461
           NM++L   F DYK    R+   L KL  ENER   + + D+  E  TA  Q  + E +R
Sbjct: 402 NMVKLKEEF-DYKSLCRRLDIELDKLIAENER--QRKYFDDEIERITAEAQLRVTEAER 457


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,578,897
Number of Sequences: 37544
Number of extensions: 237314
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)