Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1671
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51336| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_20167| Best HMM Match : RhoGEF (HMM E-Value=0.73)                   29   2.8  
SB_21816| Best HMM Match : DUF1279 (HMM E-Value=1.1)                   28   3.7  
SB_38851| Best HMM Match : RVT_1 (HMM E-Value=9.8e-20)                 28   4.9  
SB_3901| Best HMM Match : PkinA_anch (HMM E-Value=2.4)                 28   4.9  
SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_51336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +3

Query: 297 LNPAFRDYKERTTRVADVLQKLRKENERCALKGWRDE 407
           L P+ + ++ERT  V DV+++ RK +    L+GWR+E
Sbjct: 90  LAPSLKTFEERTKGVNDVMEEFRKNDVFVTLRGWREE 126


>SB_20167| Best HMM Match : RhoGEF (HMM E-Value=0.73)
          Length = 445

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 411 NIHLSILLMRISHSPSSVFAGHQQLLWSFLCNL*KQDL-IPTYF 283
           NI+LS +L+ ++  PS+   G  +  WS+L  L  + L IPT F
Sbjct: 224 NIYLSEVLVGLAPDPSTPNPGGAKRAWSYLKLLRSESLGIPTLF 267


>SB_21816| Best HMM Match : DUF1279 (HMM E-Value=1.1)
          Length = 894

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -3

Query: 465 HSCPSPIGSLDKTQC--*LQNIHLSILLMRISHSPSSVFAGHQQLLWSFLCN 316
           HSCPSP+G  ++  C     ++ L+  L+ ++    SV   H  L+  ++ N
Sbjct: 525 HSCPSPLGGANQLYCTPPWSSLRLTTKLVGMALPIDSVVDLHNDLVSDYIIN 576


>SB_38851| Best HMM Match : RVT_1 (HMM E-Value=9.8e-20)
          Length = 838

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 417 LQNIHLSILLMRISHSPSSVFAGHQQLLWSFLCNL*KQDL-IPTYF 283
           + NI+LS +L  ++  PS+   G  +  WS+L  L  + L IPT F
Sbjct: 55  MHNIYLSEVLGGLAPDPSTPNPGGAKRAWSYLKLLRSESLGIPTLF 100


>SB_3901| Best HMM Match : PkinA_anch (HMM E-Value=2.4)
          Length = 239

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 417 LQNIHLSILLMRISHSPSSVFAGHQQLLWSFLCNL*KQDL-IPTYF 283
           + NI+LS +L  ++  PS+   G  +  WS+L  L  + L IPT F
Sbjct: 55  MHNIYLSEVLGGLAPDPSTPNPGGAKRAWSYLKLLRSESLGIPTLF 100


>SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 411 NIHLSILLMRISHSPSSVFAGHQQLLWSFLCNL*KQDL-IPTYF 283
           NI+LS +L  ++  PS+   G  +  WS+L  L  + L IPT F
Sbjct: 484 NIYLSEVLGGLAPDPSTPNPGGAKRAWSYLKLLRSESLGIPTLF 527


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,990,325
Number of Sequences: 59808
Number of extensions: 286527
Number of successful extensions: 628
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)