Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1671
         (497 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071204-1|AAL48826.1|  341|Drosophila melanogaster RE24541p pro...    79   2e-15
BT003757-1|AAO41436.1|   77|Drosophila melanogaster RE73276p pro...    30   2.0  
BT003503-1|AAO39507.1|  765|Drosophila melanogaster RE38148p pro...    30   2.0  

>AY071204-1|AAL48826.1|  341|Drosophila melanogaster RE24541p
           protein.
          Length = 341

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 39/77 (50%), Positives = 52/77 (67%)
 Frame = +3

Query: 267 CSKSPGNMLELNPAFRDYKERTTRVADVLQKLRKENERCALKGWRDECFEVSTAFYQESL 446
           C ++   ++ELNPAFRDY ERT ++  VL+ LR E    AL+GWRDE FEV       +L
Sbjct: 56  CEQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGLFPALQGWRDEYFEVKADC--RAL 113

Query: 447 LEMDRSAICLFGIRNYG 497
           L+M+R+A  LFG+R YG
Sbjct: 114 LKMERAATPLFGVRKYG 130



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 20/51 (39%), Positives = 34/51 (66%)
 Frame = +2

Query: 125 LLKLARKFNSFYLSGLHQGICKPFIVAGHQVGLVRPDVLKYLQRFPEVFKI 277
           L+ +       ++  +H+   +PF+V G QVGL++ DVLK+L+++PEVF I
Sbjct: 3   LINIVVPTEHLFVLSIHKCDIRPFVVEGKQVGLIKSDVLKHLEKYPEVFCI 53


>BT003757-1|AAO41436.1|   77|Drosophila melanogaster RE73276p
           protein.
          Length = 77

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 34  ICRPLLKVETIYYMKENYERYEFSTKQRFGFVKTSPQ 144
           +C P L +  IY +K   +  EF  K+R+G  +  PQ
Sbjct: 1   MCHPSLLMWRIYSLKPTSKFLEFRIKRRYGLTRWHPQ 37


>BT003503-1|AAO39507.1|  765|Drosophila melanogaster RE38148p
           protein.
          Length = 765

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 405 HLSILLMRISHSPSSVFAGHQQLLWSFLCN 316
           HL +    +SH P  VF G   L W FL N
Sbjct: 207 HLELSHNNVSHLPHGVFLGLHSLQWLFLVN 236


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,439,770
Number of Sequences: 53049
Number of extensions: 414499
Number of successful extensions: 890
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)