Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1671
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   0.77 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   0.77 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   0.77 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   5.4  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.4  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 20/77 (25%), Positives = 29/77 (37%)
 Frame = +3

Query: 258 SQRCSKSPGNMLELNPAFRDYKERTTRVADVLQKLRKENERCALKGWRDECFEVSTAFYQ 437
           S+ C +  GN+   N   R    +     +   +  K    C L G  D  F   TA  +
Sbjct: 542 SKLCQQCVGNLASNNDRIRQVT-KCKATNEETYRGGKGALSCLLDGKGDVAFVPLTALSE 600

Query: 438 ESLLEMDRSAICLFGIR 488
           E +   D + IC  G R
Sbjct: 601 EGVQSKDLALICPDGGR 617


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 20/77 (25%), Positives = 29/77 (37%)
 Frame = +3

Query: 258 SQRCSKSPGNMLELNPAFRDYKERTTRVADVLQKLRKENERCALKGWRDECFEVSTAFYQ 437
           S+ C +  GN+   N   R    +     +   +  K    C L G  D  F   TA  +
Sbjct: 542 SKLCQQCVGNLASNNDRIRQVT-KCKATNEETYRGGKGALSCLLDGKGDVAFVPLTALSE 600

Query: 438 ESLLEMDRSAICLFGIR 488
           E +   D + IC  G R
Sbjct: 601 EGVQSKDLALICPDGGR 617


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 20/77 (25%), Positives = 29/77 (37%)
 Frame = +3

Query: 258 SQRCSKSPGNMLELNPAFRDYKERTTRVADVLQKLRKENERCALKGWRDECFEVSTAFYQ 437
           S+ C +  GN+   N   R    +     +   +  K    C L G  D  F   TA  +
Sbjct: 542 SKLCQQCVGNLASNNDRIRQVT-KCKATNEETYRGGKGALSCLLDGKGDVAFVPLTALSE 600

Query: 438 ESLLEMDRSAICLFGIR 488
           E +   D + IC  G R
Sbjct: 601 EGVQSKDLALICPDGGR 617


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 412 LKSALRFIKRAYWRWTGVPYAY 477
           LK+A R    A W +   PY Y
Sbjct: 201 LKAAKRMRPAANWGYYAYPYCY 222


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 297 IPTYFPAILNTSGKRCKYFKTS 232
           + TYFP+++  +    K+F  S
Sbjct: 42  VGTYFPSLIGANEHYSKFFPVS 63


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 248 NILKHQVGQDQLDAQ 204
           NILK  VGQ Q+D Q
Sbjct: 131 NILKSIVGQLQVDTQ 145


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 297 LNPAFRDYKERTT 335
           L  +FRD+++RTT
Sbjct: 266 LTLSFRDFRDRTT 278


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 297 LNPAFRDYKERTT 335
           L  +FRD+++RTT
Sbjct: 261 LTLSFRDFRDRTT 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,939
Number of Sequences: 438
Number of extensions: 2727
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)