Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1670
         (610 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    25   0.66 
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    25   0.66 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.1  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   8.1  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = -1

Query: 193 YYWIVILIPMYSRFGNNFTIKNAFRSLYLIVKLSKKEKLKN 71
           +YW+++++ M+SR     T ++A ++   + ++  K  LKN
Sbjct: 328 FYWLLVMVAMFSR-----TQQSANKTATFVHEIWNKYALKN 363


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = -1

Query: 193 YYWIVILIPMYSRFGNNFTIKNAFRSLYLIVKLSKKEKLKN 71
           +YW+++++ M+SR     T ++A ++   + ++  K  LKN
Sbjct: 284 FYWLLVMVAMFSR-----TQQSANKTATFVHEIWNKYALKN 319


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 504 NSGTCNEIYIKLRIHTQKVYIYTQSQSHIH 415
           N+GTC +I    R H    Y  +  Q+ I+
Sbjct: 157 NNGTCEDIGNSHRCHCSDGYSGSYCQTEIN 186


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 199 PGLITKISYMTLERDSQEVLPP 264
           PG    ISY+++E ++    PP
Sbjct: 715 PGAKESISYLSMENNAPPPPPP 736


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 565 HWRDLMPKAFSTGQPKVVQSK*W 497
           +WR+ +P+A+      +V S+ W
Sbjct: 260 NWREPLPEAYFPKLDSLVASRTW 282


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,291
Number of Sequences: 336
Number of extensions: 3343
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)