Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1670
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68011-2|CAA92013.2|  381|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF078785-4|AAC27089.3|  609|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF039053-12|AAC25872.3|  289|Caenorhabditis elegans Serpentine r...    27   7.9  

>Z68011-2|CAA92013.2|  381|Caenorhabditis elegans Hypothetical
           protein T21B6.2 protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 380 RLACYMAT*RVSLSQTTNSSIYFSYVVTISEMDVH-MFITGGRTSC 246
           +L  Y A   + L    N  IYF    T +  DVH MF+ G  T C
Sbjct: 290 QLIPYTACIMIELHTGNNVKIYFRNTTTENPDDVHEMFVPGCSTDC 335


>AF078785-4|AAC27089.3|  609|Caenorhabditis elegans Hypothetical
           protein C04E12.4 protein.
          Length = 609

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 157 RFGNNFTIKNAFRSLYLIVKLSKKEKLKNILISSSTN 47
           +F   FT+K  ++SLYL  K++ + KL     +S  N
Sbjct: 225 KFERGFTVKAFWKSLYLAEKITTQNKLIQFNPNSGDN 261


>AF039053-12|AAC25872.3|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 18 protein.
          Length = 289

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 21  KNITFYSYLFVDDDMRMFLSFSFLLNFTIRY 113
           KN++  +YL + D + M L F FL NFT  Y
Sbjct: 207 KNLSRVNYLAIMDSIVMLL-FDFLPNFTANY 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,354,481
Number of Sequences: 27780
Number of extensions: 273312
Number of successful extensions: 556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)