Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1670
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    26   0.33 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.4  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 172 IPMYSRFGNNFTIKNAFRSL 113
           +P Y  FG+N T+ N F SL
Sbjct: 601 MPRYCLFGHNVTLANKFESL 620


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 30  TFYSYLFVDDDMRMFLSFSFLLNFTIRY 113
           T+   L+ D  + +++ F FL+ F  RY
Sbjct: 49  TYLHLLYQDVHVMIWIGFGFLMTFLRRY 76


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 158  RIH-WNENNNPIISFPV*LRRYLT*HW 235
            R+H W +N  PI+ F +  R     HW
Sbjct: 1518 RLHVWPDNGCPILYFTIQYRPINEFHW 1544


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 158  RIH-WNENNNPIISFPV*LRRYLT*HW 235
            R+H W +N  PI+ F +  R     HW
Sbjct: 1514 RLHVWPDNGCPILYFTIQYRPINEFHW 1540


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 572 KLTLAGLNA*GILYRSTKG 516
           KL  AGL++  I+Y S KG
Sbjct: 251 KLPFAGLHSHTIIYLSAKG 269


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 225 HDTGKGLTRGPATSNKHVYIHFTYSNDIR 311
           + +GK LT      +K  Y+ + + ND R
Sbjct: 26  NSSGKNLTNTLNVIHKWKYLDYDFDNDER 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,031
Number of Sequences: 438
Number of extensions: 3842
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)