Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1669
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347     30   1.4  
02_04_0275 - 21469391-21470650                                         30   1.4  
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581...    29   3.2  
03_02_0163 - 6056959-6058989                                           29   3.2  
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122...    28   4.3  
06_03_1097 - 27570037-27570262,27570575-27570730,27570763-275708...    28   5.6  
03_05_0576 + 25765137-25766420                                         28   5.6  
01_07_0036 + 40647046-40647100,40647120-40647571,40648135-406482...    27   9.9  

>04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347
          Length = 137

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +1

Query: 13  ASLAVVAFAKEEKGTPKAVEEKKQDKR 93
           ASL  V  AKEEK   K  EEKK DK+
Sbjct: 65  ASLLSVGPAKEEKKEEKKPEEKKDDKK 91


>02_04_0275 - 21469391-21470650
          Length = 419

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/42 (26%), Positives = 27/42 (64%)
 Frame = +2

Query: 389 SRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTQ 514
           +R+T+P+  R  +P R +  +L  + +KR+ P P + +++++
Sbjct: 183 ARSTAPMAPRVNFPQRTRTQFLPSSGVKRRMPSPPQVSASSE 224


>06_01_0778 +
           5816588-5816885,5817554-5817615,5818764-5818905,
           5819969-5820064,5820147-5820266,5820401-5820663,
           5821507-5821617
          Length = 363

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 370 PSLPPQQF*CARGVHDDRGGSRLRWQL 290
           P LPP+   C   VH D GG+ +RW L
Sbjct: 247 PPLPPE---CNAQVHTDYGGAAVRWGL 270


>03_02_0163 - 6056959-6058989
          Length = 676

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 344 SKLLRW*RRCL-FRIQSRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTQYT 520
           S LL W  R +    Q +N SP P+  +  ++       P P     P P R+++ ++Y 
Sbjct: 5   SSLLSWPHRAISLSFQPKNPSPSPATARVSVQDP-----PPPPSDANPSPGRSSNTSRYV 59

Query: 521 YLSP 532
           +++P
Sbjct: 60  WVNP 63


>01_05_0647 +
           23910318-23910694,23911732-23911867,23912067-23912277,
           23912357-23912724,23913793-23914081,23914173-23914372,
           23914452-23914646
          Length = 591

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 368 RCLFRIQSRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPS 493
           +CL  +   +  P+P  R +P   + P   PTP+   +P P+
Sbjct: 37  KCLMCVCDVDPHPLPPSRHHPPPPEEPEPEPTPVNHHYPPPT 78


>06_03_1097 -
           27570037-27570262,27570575-27570730,27570763-27570881,
           27572154-27572236,27574991-27575041,27575218-27575674,
           27576139-27576228,27576672-27576701
          Length = 403

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 109 LCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTM 14
           L HR P  L  S R   +  S  WQ+QPR  M
Sbjct: 301 LVHRLPQALRFSNRFSCILSSARWQQQPRDGM 332


>03_05_0576 + 25765137-25766420
          Length = 427

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 61  SVCLSPPWQRQPRPTMPP 8
           +V +SPP Q +PRP +PP
Sbjct: 98  AVSVSPPTQPRPRPELPP 115


>01_07_0036 +
           40647046-40647100,40647120-40647571,40648135-40648257,
           40648407-40648461,40648613-40648722,40649352-40649531,
           40650003-40650101,40651182-40651280,40652195-40652289,
           40652290-40652378,40652739-40652901,40653299-40653404,
           40655647-40655829,40656059-40656286,40656373-40656486
          Length = 716

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 144 IATSEIMSSIRS-YVIDAPFVLFLLFDCLRCAFLL 43
           + TSEI   + S +V   PF++ L+  C+ CA LL
Sbjct: 387 LTTSEIDYYVWSCFVYSVPFLVTLISCCMTCALLL 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.137    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,047,261
Number of Sequences: 37544
Number of extensions: 224876
Number of successful extensions: 576
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)