Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1668
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    27   1.7  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   2.9  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    27   2.9  
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    26   3.9  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    26   3.9  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    26   3.9  

>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 512 ETRKTFINSVMIFLNQYKFDGLDLD 586
           E RK F N V   + +Y+FDG+ LD
Sbjct: 192 EVRKFFQNWVSDLIKRYQFDGIRLD 216


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 210 KRWSATSRAGQPTDPTMGSS 269
           KR S   R G+PT P MGSS
Sbjct: 498 KRKSIMERMGRPTSPFMGSS 517


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 437 HLKVTIAIGGWNEGSERYSKMA 502
           HL+ T  I GWN+ +E  +K+A
Sbjct: 406 HLERTYEISGWNDSTEFLAKLA 427


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 353 SLDPWQDLEKDYGKAGYKRIVALKERYPHLKV 448
           S D    L   YGKAG + I  +K+ Y  L++
Sbjct: 275 SADQLNLLRAHYGKAGSENIAVIKQLYHELQI 306


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 491 SKMASSPETRKTFI----NSVMIFLNQYKFDGLDLDWEYPSKKGGKPD 622
           SKM++S ++   F+    N +   +N++ F G     E   +KGG PD
Sbjct: 274 SKMSASKDSSAIFMTDTPNKIKNKINRHAFSGGGATIEIHREKGGNPD 321


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 565 LVLIQKNHDAVYKSLSRFWTGCHFGIAFRTLIP-ASYSYGHLQM 437
           L+ + K  + V   L RFW  CH+G    T +  A   +  LQM
Sbjct: 270 LLFVGKCVNRVTPYLERFWFKCHYGSKLGTALQVAGPGFDVLQM 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,588
Number of Sequences: 5004
Number of extensions: 57288
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)