Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1668
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 42 3e-04
04_03_0649 - 18402976-18403220,18403305-18404499 36 0.035
10_08_0011 + 14088375-14089241 34 0.080
10_08_0009 + 14075929-14076789 33 0.25
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064... 28 5.3
06_03_0135 + 17049018-17049472,17049591-17049677,17049783-170498... 28 5.3
06_03_0126 + 16978566-16979104,16979279-16979365,16979481-169795... 28 5.3
07_01_0059 - 439518-439646,439767-439885,440003-440241,440320-44... 28 7.0
01_01_0088 + 688792-691441,691629-693013 27 9.2
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Frame = +2
Query: 251 PNDGQFT-LDNLQPALCTHLVYSFAGLNETTFTIKSLDPWQDLEKDYGKAGYKRIVALKE 427
P+ ++ L ++ +L +HL YS ++ET + P E+ + + +
Sbjct: 48 PSSSHYSPLGSIDTSLYSHLYYSSLSIDETRCAVA---PPSSGEESSILSNFSSSIKSSG 104
Query: 428 RYPHLKVTIAIGG--WNE--GSERYSKMASSPETRKTFINSVMIFLNQYKFDGLDLDWEY 595
+K ++IG + E + +S+MAS R+ FINS + FDGLDL W +
Sbjct: 105 GGFAVKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDGLDLAWRF 164
Query: 596 PS 601
P+
Sbjct: 165 PA 166
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 35.5 bits (78), Expect = 0.035
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 488 YSKMASSPETRKTFINSVMIFLNQYKFDGLDLDWEYPS 601
++ MA+ P +R FI + + + FDGLD+ W +P+
Sbjct: 134 FAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFPA 171
>10_08_0011 + 14088375-14089241
Length = 288
Score = 34.3 bits (75), Expect = 0.080
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +2
Query: 410 IVALKERYPHLKVTIAIGGWNEGSERYSKMASSPETRKTFIN----SVMIFLNQYKFDGL 577
+ A+K +P++ V + +GG + + +K+ SP + +++ SV ++ Y DG+
Sbjct: 71 VAAVKAAHPNVSVMVGLGG--DSVQDTAKVFFSPTSVDSWVANAVASVSGIIDAYGLDGV 128
Query: 578 DLDWEYPSKKGG 613
D+D+E+ + GG
Sbjct: 129 DVDYEHFNDDGG 140
>10_08_0009 + 14075929-14076789
Length = 286
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +2
Query: 410 IVALKERYPHLKVTIAIGG---WNEG-SERYSKMASSPETRKTFINSVMIFLNQYKFDGL 577
+ A K +P+L V +A+GG N G + ++ +S + +SV ++ Y DG+
Sbjct: 71 VAAAKAAHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGLDGV 130
Query: 578 DLDWEY 595
D+D+E+
Sbjct: 131 DVDYEH 136
>12_01_1031 - 10605581-10606088,10606360-10606420,10606448-10606491,
10606664-10608382,10609848-10610791
Length = 1091
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 182 QILGGPMHGKAVVCYVASWAAYRPNDGQFTLDNLQPALCTHLVYSFAGLNETTFT 346
+++GGP+ + Y ASW + N + N+ P + TH++ A ++T T
Sbjct: 910 ELMGGPIFSRVPRRYCASWVHFSAN-----VYNIYPMVLTHVLTIIAHQHKTYTT 959
>06_03_0135 +
17049018-17049472,17049591-17049677,17049783-17049839,
17049953-17050191,17050753-17050871,17051002-17051088,
17051198-17051257
Length = 367
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 493 GIAFRTLIPASYSYGHLQMRVALLQSHDTFVAGLA 389
G R +IPA ++YG LQ V LQ+ + V +A
Sbjct: 36 GAYARWMIPALFAYGPLQCHVRFLQTQNMVVPVMA 70
>06_03_0126 +
16978566-16979104,16979279-16979365,16979481-16979537,
16979648-16979886,16981776-16981894,16982010-16982096,
16983898-16983971,16984483-16984547,16984581-16984961,
16985136-16985401
Length = 637
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = -3
Query: 493 GIAFRTLIPASYSYGHLQMRVALLQSHDTFV-----AGLAVILF*ILPWVQAFNCECG 335
G R +IPA ++YG LQ V LQ+ + + AG A + ++ W + G
Sbjct: 64 GAYARWMIPALFAYGPLQCHVRFLQTQNVVLPVMASAGAAALCHLVVCWALVYAAGMG 121
>07_01_0059 -
439518-439646,439767-439885,440003-440241,440320-440376,
440480-440566,440664-441208,441967-442026,443552-443935,
444049-444114
Length = 561
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 481 RTLIPASYSYGHLQMRVALLQSHDTFVAGLAVILF*ILPWVQAFNCECGFV 329
R IPA ++YG +Q + LQ+ +++F +LP V F FV
Sbjct: 240 RYSIPAQFAYGFIQCTLRFLQTQSVVT---PLVVFALLPLVLHFGITHAFV 287
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 334 FVESGERVHQMGAERWLQ-VIQGELPIVGSVGCPARDVADHRFSMHRPAQYLAV 176
F ++ E++ + GA Q I LPIVG G A H ++ HR Q+ V
Sbjct: 231 FDQTMEQLLKGGAMHHTQNYIMSVLPIVGPGGVGKTTFAQHLYNDHRTKQHFTV 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,242,809
Number of Sequences: 37544
Number of extensions: 388370
Number of successful extensions: 1022
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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