Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1668
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.4  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   9.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.8  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 230 ASWAAYRPNDGQFT 271
           A+WA  R N G FT
Sbjct: 128 AAWARLRMNSGMFT 141


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 230 ASWAAYRPNDGQFT 271
           A+WA  R N G FT
Sbjct: 128 AAWARLRMNSGMFT 141


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 401  YKRIVALKERYPHLKVTIAIGGWNE 475
            Y  +   +E  P+L+   AI  WNE
Sbjct: 1169 YPEVELDRELRPYLRTAAAILTWNE 1193


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 210 FPCIGPPNIWP 178
           F CIGPP  +P
Sbjct: 148 FRCIGPPTPFP 158


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 554 NQYKFDGLDLDWEY 595
           N+ KF+ ++ DW+Y
Sbjct: 528 NKDKFESVEEDWKY 541


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 425 PSKPRYVCSRPC 390
           P  P  VCS PC
Sbjct: 580 PEPPESVCSLPC 591


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,189
Number of Sequences: 438
Number of extensions: 4161
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)