Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1666
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    27   2.1  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    26   3.7  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   4.9  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   4.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   4.9  
SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit...    25   8.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.5  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   8.5  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   8.5  

>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 466 AGKAVLVTGCDNVLGNALARRLDDMGYHV 552
           +GK VLVTG    +G  +A +L   GY V
Sbjct: 2   SGKLVLVTGVTGFIGAHVAEQLLQAGYRV 30


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 24  DSCSLYGHGTRCHPEYSAPFRT*AKLRGEHLRQIIRCI 137
           D   L G+G +C PEY       A+   E L  ++  I
Sbjct: 204 DKFVLNGYGDKCDPEYCGSLENRARFCLELLESVVNAI 241


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 21  ADSCSLYGHGTRCHPEYSAP 80
           +D C+L  H TR +PE  AP
Sbjct: 255 SDDCTLQIHDTRLNPEEEAP 274


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 287 HGTS*DGFDGPLIREPRRAEGRRCIDGAVIDARRVTSPATMIPTYCS 147
           HG S  GF+G ++  P R E        +ID  R   P T+  T C+
Sbjct: 80  HGAS--GFEGAVLPPPSRKENEGHAVDFIIDTLRNNEPGTI--TICT 122


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +1

Query: 157 VGIMVAGDVTRRASITAPSMHRRPSARRGSLIKGPSNPSQEVPWDIIDRCALPIVLC 327
           +G+ VA     RA +T   M  +  ARRGS+ + P NP+Q +   + D  ++ I  C
Sbjct: 335 IGVPVAA--IERA-LTIRIMQTQHGARRGSVYEVPLNPTQALA--VRDALSMAIYNC 386


>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
           Arc21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 253 KGPSNPSQEVPWDIIDRC 306
           +GP+ P+ E   DIID C
Sbjct: 30  RGPAYPADESQMDIIDEC 47


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 530 SLRASALPNTLSHPVTSTALPAAV 459
           +L A+  PNTL+ PVT  A  +AV
Sbjct: 258 ALPANGTPNTLASPVTLPAANSAV 281


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +1

Query: 328 HALAVVLSTILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGKAVLV 486
           HA A+ L   +++ H+ ++   T  +   ISV+  L ++H L+ T + + + V
Sbjct: 497 HANALNLFGDVSASHLFEILSATALIEGRISVSSVLQYFHALRKTPSKEIIAV 549


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 346 LSTILNSLHISQVSVFT-LFLWFAISVTGSLWFYH 447
           L+ +  S  I+Q+S  T L LW  +S   +LW Y+
Sbjct: 238 LAGVTKSQCIAQMSPITYLVLWLFLSFLLALWIYY 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,928
Number of Sequences: 5004
Number of extensions: 53891
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)