Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1666
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061 31 0.53
03_06_0464 + 34126930-34127065,34127149-34127333,34127444-341276... 31 0.53
07_03_0894 + 22362717-22363514 30 1.6
04_04_1227 - 31882500-31882778,31883039-31883329,31883555-318838... 30 1.6
07_01_0501 - 3745447-3746244 28 5.0
06_03_0056 - 16046535-16047309,16047625-16048784,16049233-160493... 28 5.0
04_03_1035 - 21887562-21890030 28 5.0
09_04_0592 - 18823706-18823856,18823979-18824171,18824329-188244... 28 6.5
11_06_0724 - 26696401-26696703,26696875-26697025,26697115-266971... 27 8.7
08_02_1249 - 25584175-25584325,25584520-25584625,25584801-255849... 27 8.7
03_05_0583 - 25838016-25838684 27 8.7
03_02_0949 + 12658449-12658624,12658771-12658990,12659671-12659709 27 8.7
>04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061
Length = 346
Score = 31.5 bits (68), Expect = 0.53
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 325 CHALAVVLSTILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGKAVLV-TGCDN 501
C AVV++T+ L ++ +V TLFL TG + AG AVLV
Sbjct: 172 CVTYAVVVATLQLFLRLTGANVTTLFLPMLSQATGC------GKAALAGHAVLVLANAGG 225
Query: 502 VLGNALARR 528
VLG+ALA R
Sbjct: 226 VLGSALAAR 234
>03_06_0464 +
34126930-34127065,34127149-34127333,34127444-34127632,
34128309-34128471,34129046-34129232,34129467-34129611
Length = 334
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 469 GKAVLVTGCDNVLGNALARRLDDMGYHVFA 558
G+ VLVTG +G+ L RRL GY V A
Sbjct: 11 GETVLVTGASGFIGSCLVRRLLARGYSVHA 40
>07_03_0894 + 22362717-22363514
Length = 265
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 466 AGKAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKSGQ 582
AG+ +VTG +G A+A L +G V G+ + + +
Sbjct: 22 AGRVAIVTGASRGIGRAIAAHLSALGASVVVGYASSAAK 60
>04_04_1227 -
31882500-31882778,31883039-31883329,31883555-31883800,
31884212-31884353,31884583-31884653
Length = 342
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = -2
Query: 194 ARRVTSPATMIPTYCSEHDNAPDNLT*MFSTKLSSGSERRTVFRVAPC 51
+RR PA CS HD P N + STKL S VF PC
Sbjct: 23 SRRKCRPAGRNNFRCSLHDKVPLNAHGVLSTKLLSCLAASLVFISPPC 70
>07_01_0501 - 3745447-3746244
Length = 265
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 466 AGKAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKSGQ 582
AG+ +VTG +G +A L +G + G+ + S +
Sbjct: 24 AGRVAIVTGASRGIGRGIAAHLSALGASLVLGYASSSAE 62
>06_03_0056 -
16046535-16047309,16047625-16048784,16049233-16049340,
16049487-16049672,16050342-16050398
Length = 761
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +1
Query: 94 LSFVENIYVRLSGALSCSEQ*VGIMVAGDVTRRASITAPSMHRRPSARRGSLIKGPSNPS 273
L+F+ N R+ + + V + ++ A + ++PS R+ L+ PS
Sbjct: 497 LAFLRNSRTRIPSISEDAVRLVASFLDSELKTEALEILHELLQQPSCRKSRLMASVVAPS 556
Query: 274 QEVPWDIIDRCALPIVL 324
+ WD D L +VL
Sbjct: 557 VFLAWDSADSLCLELVL 573
>04_03_1035 - 21887562-21890030
Length = 822
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 521 ASALPNTLSHPVTSTALPAAVTCKLW*N 438
A+A P +S V++ A+ AVTC LW N
Sbjct: 238 AAASPPRISRAVSTVAVGDAVTCVLWGN 265
>09_04_0592 -
18823706-18823856,18823979-18824171,18824329-18824491,
18824588-18824779,18825002-18825063,18825167-18825287
Length = 293
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 457 VTAAGKAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKSGQQSMQIL 600
+++ GK V VTG + + L +RL + GYHV + S + + L
Sbjct: 3 ISSKGK-VCVTGASGFVASWLIKRLLEAGYHVIGTVRDPSNRDKVSHL 49
>11_06_0724 -
26696401-26696703,26696875-26697025,26697115-26697184,
26697526-26697736,26697928-26698085,26698684-26699500
Length = 569
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 171 CRGRNSASVDHGAVDASSAFSTSRL 245
CRG +AS G VDA+ A +T+RL
Sbjct: 83 CRGDANASACSGCVDAAYAAATARL 107
>08_02_1249 -
25584175-25584325,25584520-25584625,25584801-25584963,
25585047-25585241,25585286-25585548,25585654-25585774
Length = 332
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 451 LQVTAAGKAVLVTGCDNVLGNALARRLDDMGYHV 552
++ T GK V VTG + + L +RL + GYHV
Sbjct: 1 MENTTKGK-VCVTGASGYVASWLVKRLLESGYHV 33
>03_05_0583 - 25838016-25838684
Length = 222
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 272 DGFDGPLIREPRRAEGRRCIDGAVIDARRVT 180
DGF+ P+ P A GRRC G A +T
Sbjct: 127 DGFNAPMAIVPAAAGGRRCPRGGPRCAAEIT 157
>03_02_0949 + 12658449-12658624,12658771-12658990,12659671-12659709
Length = 144
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 501 CIRQRTGPKTGRYGISCVCWLS 566
C+R+ +G + G++ VCWL+
Sbjct: 115 CMREESGGNSPELGVASVCWLA 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,119,850
Number of Sequences: 37544
Number of extensions: 403121
Number of successful extensions: 1072
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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