Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1666
(603 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003130-7|AAO38638.1| 247|Caenorhabditis elegans Dehydrogenase... 45 5e-05
AF003130-6|AAO38639.1| 343|Caenorhabditis elegans Dehydrogenase... 45 5e-05
AF003130-5|AAB54122.2| 368|Caenorhabditis elegans Dehydrogenase... 45 5e-05
AF022968-6|AAB69884.1| 388|Caenorhabditis elegans Dehydrogenase... 41 6e-04
Z74032-1|CAA98465.3| 342|Caenorhabditis elegans Hypothetical pr... 37 0.010
Z83118-1|CAB05575.1| 975|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81552-6|CAB04489.1| 975|Caenorhabditis elegans Hypothetical pr... 30 1.5
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ... 29 3.4
AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear recep... 28 4.5
AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear horm... 28 4.5
Z49969-3|CAA90267.1| 792|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF106579-8|AAC78201.1| 710|Caenorhabditis elegans Hypothetical ... 28 5.9
AF022973-4|AAC25798.1| 314|Caenorhabditis elegans Temporarily a... 28 5.9
>AF003130-7|AAO38638.1| 247|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform b protein.
Length = 247
Score = 44.8 bits (101), Expect = 5e-05
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +1
Query: 343 VLSTILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGK-AVLVTGCDNVLGNAL 519
+L ILN + SVF L + F + + G F LQ+ K AV +TGCD+ G L
Sbjct: 4 ILYWILNLTVVE--SVFYLVVAFLLFLIGR-HFIEKLQINNLSKRAVFITGCDSGFGRGL 60
Query: 520 ARRLDDMGYHVFAGFQTKSGQQSM 591
A + + G VFAG T+ G +S+
Sbjct: 61 ALKCLEQGMPVFAGCLTEQGIESL 84
>AF003130-6|AAO38639.1| 343|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform c protein.
Length = 343
Score = 44.8 bits (101), Expect = 5e-05
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +1
Query: 343 VLSTILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGK-AVLVTGCDNVLGNAL 519
+L ILN + SVF L + F + + G F LQ+ K AV +TGCD+ G L
Sbjct: 4 ILYWILNLTVVE--SVFYLVVAFLLFLIGR-HFIEKLQINNLSKRAVFITGCDSGFGRGL 60
Query: 520 ARRLDDMGYHVFAGFQTKSGQQSM 591
A + + G VFAG T+ G +S+
Sbjct: 61 ALKCLEQGMPVFAGCLTEQGIESL 84
>AF003130-5|AAB54122.2| 368|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform a protein.
Length = 368
Score = 44.8 bits (101), Expect = 5e-05
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +1
Query: 343 VLSTILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGK-AVLVTGCDNVLGNAL 519
+L ILN + SVF L + F + + G F LQ+ K AV +TGCD+ G L
Sbjct: 29 ILYWILNLTVVE--SVFYLVVAFLLFLIGR-HFIEKLQINNLSKRAVFITGCDSGFGRGL 85
Query: 520 ARRLDDMGYHVFAGFQTKSGQQSM 591
A + + G VFAG T+ G +S+
Sbjct: 86 ALKCLEQGMPVFAGCLTEQGIESL 109
>AF022968-6|AAB69884.1| 388|Caenorhabditis elegans Dehydrogenases,
short chain protein16 protein.
Length = 388
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +1
Query: 448 NLQVTAAGKAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKSGQQSM 591
N V ++GK V++TGCD+ G LA L D +VFA T+ G S+
Sbjct: 25 NFYVESSGKYVMITGCDSGFGRLLATSLLDKHVNVFAACFTQQGMASL 72
>Z74032-1|CAA98465.3| 342|Caenorhabditis elegans Hypothetical
protein F35B12.2 protein.
Length = 342
Score = 37.1 bits (82), Expect = 0.010
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 385 SVFTLFLWF-AISVTGSLWFYHNLQVTAAG----KAVLVTGCDNVLGNALARRLDDMGYH 549
++FT L+F A+ V ++ Y + G +A+L+TGCD G LA++ G+
Sbjct: 8 TLFTWVLYFVAVVVVWNIVRYILELIPEGGSLQDRAILITGCDTGFGRELAKKCAKNGFL 67
Query: 550 VFAGFQTKSGQQSMQ 594
VFAG T ++++
Sbjct: 68 VFAGCLTTEAAKTLE 82
>Z83118-1|CAB05575.1| 975|Caenorhabditis elegans Hypothetical
protein F56G4.1 protein.
Length = 975
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 355 ILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGKAVLVTGCDNVLGNALARRLD 534
+ S ++ SV LFL + GS+W + +TAAG + +L + L
Sbjct: 215 VFESNDVANCSVAVLFLCLLPTHLGSMWLRPLVTLTAAGLIFMENKSCQILQSPTLTYLG 274
Query: 535 DMGYHVF 555
D+ Y V+
Sbjct: 275 DISYVVY 281
>Z81552-6|CAB04489.1| 975|Caenorhabditis elegans Hypothetical
protein F56G4.1 protein.
Length = 975
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 355 ILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGKAVLVTGCDNVLGNALARRLD 534
+ S ++ SV LFL + GS+W + +TAAG + +L + L
Sbjct: 215 VFESNDVANCSVAVLFLCLLPTHLGSMWLRPLVTLTAAGLIFMENKSCQILQSPTLTYLG 274
Query: 535 DMGYHVF 555
D+ Y V+
Sbjct: 275 DISYVVY 281
>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
protein C26G2.1 protein.
Length = 1270
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Frame = +1
Query: 259 PSNPSQEVPWDIIDRCALPIVLCHALAV---VLSTILNSLHISQVSVFTLFL---WFAIS 420
PSNP+ ++ W II+ ++P V ++S+ S+H +++SV + A +
Sbjct: 356 PSNPASQITW-IINGRSVPTPTQREFVVENGIVSSSNVSVHSNELSVEAHQINVECMATN 414
Query: 421 VTGSLWFYHNLQVTAAGKAVLVTGCDN 501
GS H +++ A KA ++TG ++
Sbjct: 415 PEGSSAKQHVIKIIAPPKAPIITGLED 441
>AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear receptor
NHR-92 protein.
Length = 362
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 517 VRCLIHCHTQ*QVLLCRQPLPVNYGRTTRIQLRKLQTIK 401
VR +IH V P PVNY T++ L++ + +K
Sbjct: 121 VRRVIHRDNSRSVFAKEAPRPVNYKEATKVLLKEFKLVK 159
>AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 92 protein.
Length = 354
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 517 VRCLIHCHTQ*QVLLCRQPLPVNYGRTTRIQLRKLQTIK 401
VR +IH V P PVNY T++ L++ + +K
Sbjct: 113 VRRVIHRDNSRSVFAKEAPRPVNYKEATKVLLKEFKLVK 151
>Z49969-3|CAA90267.1| 792|Caenorhabditis elegans Hypothetical
protein W01C9.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 190 RASITAPSMHRRPSARRGSLIKGPSNPS 273
R + T PS+ P +R GS+I GP NPS
Sbjct: 124 RPAGTIPSLGSMPPSRSGSIITGP-NPS 150
>AF106579-8|AAC78201.1| 710|Caenorhabditis elegans Hypothetical
protein F54E2.5 protein.
Length = 710
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 343 VLSTILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGKAVLVTGCDNVLGNALA 522
VLST++ +L + +V + LW WF L + +V + C N+L N A
Sbjct: 411 VLSTVITTLLTTVFTVLIMLLWGYFKPMKFFWFLAQLTI-----SVFIISCANLLINVPA 465
>AF022973-4|AAC25798.1| 314|Caenorhabditis elegans Temporarily
assigned gene nameprotein 57 protein.
Length = 314
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 412 AISVTGSLWFYH--NLQVTAAGKAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKS 576
++++ G FY +L+ TA +VTG + +G + A L G+++F +TKS
Sbjct: 32 SLNIFGVYIFYTPIDLKRTAGASWAVVTGATDGIGRSYALDLARRGFNIFLISRTKS 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,782,575
Number of Sequences: 27780
Number of extensions: 320321
Number of successful extensions: 783
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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