Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1666
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.3  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   9.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.3  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 189 PSYVPGNHD 163
           P++VPGNHD
Sbjct: 340 PNWVPGNHD 348


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 189 PSYVPGNHD 163
           P++VPGNHD
Sbjct: 340 PNWVPGNHD 348


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 433 LWFYHNLQVTAAGKAVLVTGC 495
           LW YH+  +    K  LV  C
Sbjct: 112 LWLYHDKTLLYMSKLTLVLSC 132


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 174 GNHDSHLLLRAR 139
           GN D++LLL+AR
Sbjct: 261 GNEDANLLLKAR 272


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 500 LSHPVTSTALPAAVT 456
           +SHP+T    PAAV+
Sbjct: 101 VSHPLTGDLSPAAVS 115


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 569 LKAGNNRCRYC 601
           L+   NRC+YC
Sbjct: 64  LRINRNRCQYC 74


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 569 LKAGNNRCRYC 601
           L+   NRC+YC
Sbjct: 113 LRINRNRCQYC 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,268
Number of Sequences: 438
Number of extensions: 3699
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)