Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1663
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   4.1  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    26   5.4  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   7.1  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   9.4  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   9.4  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    25   9.4  

>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 358  LKQQVELKTMTQHEPWPKGSVEGSS 284
            LKQ++EL +   + P+P  +VE  S
Sbjct: 952  LKQEIELSSRRGNRPYPSSAVESPS 976


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 527 AMVSGQMWNQIRGPPFFHRTKTGPVYIN 444
           +++  + WNQ RG   +H   TGP + N
Sbjct: 138 SLIINKGWNQQRGGIAWHTRTTGPPWTN 165


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +3

Query: 447 YIDRASFCSMEKWWASNLIPHLPRHHCKAEEHSTNCP*LFI----VEELEVVSTDIKK 608
           YI    F S E  W+S    +L RH    E  +T+ P +F     ++EL ++  D KK
Sbjct: 90  YIINVPF-STESAWSSPSGLYLQRHRSSDENLNTDLPHIFCLNDPLDELTLIKFDGKK 146


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 49  LKKSIAIKLNDSDQKRVLPFIKFTC 123
           L++S+  KLN + +KRV  +IK +C
Sbjct: 389 LEESVHQKLNSNLEKRVEKYIKHSC 413


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 416 ESYIVAILNGPVVVGMILMIEAAGGVKNHDPTRTLAEGKR 297
           E+Y + + + P+    I  ++ +G  KN+  T + A GK+
Sbjct: 25  ENYYL-LTSSPIECSPIQQLDLSGSFKNYSTTSSRANGKK 63


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 285 LEPSTLPFGQGSCWVMVFNSTCCFNH*DHTHNHRPIQYSNNVTL 416
           L  ST  +G  + +    N     NH D ++   PIQ SN  TL
Sbjct: 274 LPSSTNTYGPSNSYGYEININESTNHVDSSYLPHPIQLSNYFTL 317


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 420 IGELHCCYTEWAC 382
           IGE++CC   W C
Sbjct: 65  IGEINCCLNGWLC 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,043
Number of Sequences: 5004
Number of extensions: 61877
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)