Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1663
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0041 - 20169308-20169317,20169485-20170491                       38   0.005
12_02_0114 - 13805646-13805665,13806062-13806194,13806633-138069...    29   2.4  
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521...    29   4.2  
04_04_1631 - 34919197-34919205,34919865-34920204,34920418-349207...    29   4.2  
07_01_0156 + 1106058-1107596                                           28   5.6  
04_01_0624 - 8202783-8203140,8203242-8203594,8203697-8203872,820...    28   5.6  
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947...    28   7.4  
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           28   7.4  

>03_05_0041 - 20169308-20169317,20169485-20170491
          Length = 338

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
 Frame = -3

Query: 629 LFIILAGFLYIRRNNLEFLYN-KQLWAVCAVFFCFAMVSGQMWNQIRGPPFFHRTKTGP- 456
           LF++   FL  R  + E L++ +++W   A+F  F  VSG M+  IR  P F   ++ P 
Sbjct: 191 LFLVSIPFLIKRIMDGETLFHDRRVWMAGALFIYFFSVSGGMYGIIRHTPMFITDRSDPN 250

Query: 455 --VYINGGSHGQFVLESYIVAILNGPVVVGMIL 363
             V+   GS  Q   E + V  L    +VG+++
Sbjct: 251 KLVFFYQGSGMQLGAEGFAVGFLY--TLVGLMI 281


>12_02_0114 -
           13805646-13805665,13806062-13806194,13806633-13806975,
           13807375-13807583,13807995-13808243
          Length = 317

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 346 VELKTMTQHEPWPKGSVEGSSQLLV*Y*SACSSHCFYQYSEQRRK 212
           ++L +M + + W  G + G    LV   S CSS C+Y  +   RK
Sbjct: 97  IDLGSMGKGQAWVNGHLIGRYWSLVAPESGCSSSCYYPGAYNERK 141


>06_03_1117 +
           27750291-27750338,27751360-27751812,27751987-27752161,
           27752227-27752551,27752705-27752786,27752820-27752889,
           27753341-27753420,27753514-27753750
          Length = 489

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
 Frame = +1

Query: 193 KKLYGYPCVFALNTDKSSEKNTQTNIRPTTD-----WNLRRFPSA-RVRVGSWFLTPPAA 354
           K+ +  P      +DK+S    Q N  PTTD       +RR  S    R         + 
Sbjct: 137 KRTHSLPVTPIATSDKTSSPANQINNLPTTDDQDVQARIRRSLSVPGNRKNRSLRRADSL 196

Query: 355 SIIRIIPTTTGPFSIAT 405
            +IR+IPTT  P  + T
Sbjct: 197 GVIRVIPTTPRPIPVNT 213


>04_04_1631 -
           34919197-34919205,34919865-34920204,34920418-34920726,
           34920781-34921307,34921700-34921852,34922102-34922186,
           34922360-34922364
          Length = 475

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 174 LCKRPTSSPIYIFKIYLTSKFNKWKNSF 91
           L K P    + + ++Y+TSK ++W +S+
Sbjct: 140 LTKTPEEEKVLVAEVYITSKADQWSDSY 167


>07_01_0156 + 1106058-1107596
          Length = 512

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 149 LFIFLKYISQVNLINGRTLF*SESLSLMAIDFFKCVMFE 33
           LF+   +    N I  R +F S++ S +  DFF C++ +
Sbjct: 184 LFVIRPFCISENRIEARLIFDSKNASALEDDFFLCMLLQ 222


>04_01_0624 -
           8202783-8203140,8203242-8203594,8203697-8203872,
           8203993-8204230,8208308-8208748
          Length = 521

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -2

Query: 450 YKRGITRTVCIGELHCCYTEWAC-GCGYDPND*SSRWS 340
           Y RG  R  CIG LH  Y +  C   G +P   +  W+
Sbjct: 465 YSRGYFRRSCIGILHIWYNDQLCRDMGCNPRRKNGFWA 502


>12_01_0951 -
           9471391-9471597,9471857-9471966,9473173-9473278,
           9474719-9475060,9475598-9475647,9476745-9477717
          Length = 595

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 438 SPVYIDRASFCSMEKWWASNLIPH 509
           S V I  +SFCS+  WW ++ I H
Sbjct: 160 SNVIIGCSSFCSITDWWGADPIVH 183


>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 304 PSARVRVGSWFLTPPAASIIRIIPTTTGPFSIA 402
           P+  +R  S    PPAA   R +P TTG +S +
Sbjct: 673 PAPHIRAPSMAAPPPAAPRGRTMPPTTGRYSFS 705


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,990,739
Number of Sequences: 37544
Number of extensions: 389434
Number of successful extensions: 837
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)