Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1663
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   6e-05
SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_17550| Best HMM Match : WW (HMM E-Value=0.0012)                     31   0.81 
SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1)                     31   0.81 
SB_25281| Best HMM Match : DUF497 (HMM E-Value=2)                      31   0.81 
SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_39036| Best HMM Match : HSP9_HSP12 (HMM E-Value=6.2)                27   9.9  
SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)                     27   9.9  

>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = -3

Query: 629 LFIILAGFLYIRRNNLEFLYNKQLWAVCAV 540
           L +++ G LYIRR NLEFLYNK  WA+ A+
Sbjct: 266 LVVLIGGLLYIRRKNLEFLYNKSYWAMGAL 295


>SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 318 SCWVMVFNSTCCFNH*DHTHNHRPIQYSNNVTLQYKL 428
           S WV+VF S C F+H     N R IQY  + T  + L
Sbjct: 61  SSWVVVFKSLCTFHHLMSYGNERFIQYMASRTTSFTL 97


>SB_17550| Best HMM Match : WW (HMM E-Value=0.0012)
          Length = 677

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +2

Query: 452 RPGQFLFYGKMVGL*FDSTSAQTPLQSRRTQHKLPITVYCRGTRGC 589
           RPG+  F+ KM G+    TS + PL      HK+P  + C  TR C
Sbjct: 25  RPGRKYFFHKMSGM----TSWKHPLD---LSHKIPAEISCSKTRAC 63


>SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1)
          Length = 751

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 178 FSHLNKKL-YGYPCVFALNTDKSSEKNTQT 264
           FSHL +K   GYPC +A +TD++S+   +T
Sbjct: 21  FSHLARKTPRGYPCAYAHDTDQNSDPCQRT 50


>SB_25281| Best HMM Match : DUF497 (HMM E-Value=2)
          Length = 754

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 178 FSHLNKKL-YGYPCVFALNTDKSSEKNTQT 264
           FSHL +K   GYPC +A +TD++S+   +T
Sbjct: 21  FSHLARKTPRGYPCAYAHDTDQNSDPCQRT 50


>SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 565 NSYGQFVLCSSAL---QWCLGRCGIKLEAHHFSIEQ 467
           NS G  V+    +   +WC   CG+KLEA  F  ++
Sbjct: 45  NSDGAMVVMMMVIVMARWCAALCGVKLEARAFGTQK 80


>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 450 YKRGITRTVCIGELHCCYTEWACGC 376
           YK G++  +C      C TEW  GC
Sbjct: 218 YKEGVSGVLCSENHRTCRTEWEEGC 242


>SB_39036| Best HMM Match : HSP9_HSP12 (HMM E-Value=6.2)
          Length = 513

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 178 FSHLNKKLY-GYPCVFALNTDKSSEKNTQT 264
           F HL  ++   YPC +AL+TD+ S+   +T
Sbjct: 157 FEHLTCRISRDYPCAYALDTDQPSDPCQRT 186


>SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)
          Length = 284

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/88 (23%), Positives = 35/88 (39%)
 Frame = +1

Query: 37  NITHLKKSIAIKLNDSDQKRVLPFIKFTCEIYFKNINRGRRWSLA**FSHLNKKLYGYPC 216
           N+T+LKK    K  +      +PF K   +      +     S       + +K Y +  
Sbjct: 122 NVTYLKKKAGNKTEEMSSTVSMPFNKSLVDTSNSKCSEENGISTLEVVWPVKEKFYKFAL 181

Query: 217 VFALNTDKSSEKNTQTNIRPTTDWNLRR 300
            FA     ++E    +N    TDWN++R
Sbjct: 182 TFA-----AAESKEDSNGVNYTDWNIKR 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,888,926
Number of Sequences: 59808
Number of extensions: 455176
Number of successful extensions: 1084
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)