Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1663
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L17337-3|AAA28222.1|  331|Caenorhabditis elegans Hypothetical pr...    93   2e-19

>L17337-3|AAA28222.1|  331|Caenorhabditis elegans Hypothetical
           protein ZK686.3 protein.
          Length = 331

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
 Frame = -3

Query: 629 LFI-ILAGFLYIRRNNLEFLYNKQLWAVCAVFFCFAMVSGQMWNQIRGPPFF--HRTKTG 459
           LF+ +L G LY++RN+L+FL+N+ +W    +   F  +SGQMWN IRGPPF   +     
Sbjct: 174 LFVALLLGMLYMKRNSLDFLFNRTVWGFVCLAITFIFMSGQMWNHIRGPPFMITNPNTKE 233

Query: 458 PVYINGGSHGQFVLESYIVAILNGPVVVGMILMIEAAGGVKNHDPTRTLAEGKRRRFQ-- 285
           P +I+G +  Q + E+YIV +L   + +G I + EAA    + D  R  A  K       
Sbjct: 234 PSFIHGSTQFQLIAETYIVGLLYALIAIGFICVNEAADQSNSKD--RKNAGKKLNPLSLL 291

Query: 284 -------SVVGXXXXXXXXXXXXXXFRAKTQGYPYSFLF 189
                  ++ G              FR+K +GYPYSFLF
Sbjct: 292 NIPTNTLAIAGLVCICVFFSFLLSVFRSKYRGYPYSFLF 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,537
Number of Sequences: 27780
Number of extensions: 352286
Number of successful extensions: 854
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)