Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1663
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61790.1 68414.m06968 OST3/OST6 family protein weak similarit...    39   0.003
At1g11560.1 68414.m01327 OST3/OST6 family protein contains Pfam ...    34   0.094
At2g43440.1 68415.m05399 F-box family protein contains Pfam PF00...    29   3.5  
At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04...    27   8.1  
At5g01810.1 68418.m00100 CBL-interacting protein kinase 15 (CIPK...    27   8.1  
At4g27585.1 68417.m03962 band 7 family protein similar to stomat...    27   8.1  
At3g23780.1 68416.m02989 DNA-directed RNA polymerase family prot...    27   8.1  

>At1g61790.1 68414.m06968 OST3/OST6 family protein weak similarity
           to SP|Q13454 N33 protein {Homo sapiens}; contains Pfam
           profile PF04756: OST3 / OST6 family
          Length = 346

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = -3

Query: 629 LFIILAGFLYIRRNNLE-FLYNKQLWAVCAVFFCFAMVSGQMWNQIRGPPFFHRTKTGP- 456
           L +I   F+  R    E  L++ +LW   A+F  F  V+G M N IR  P F + +  P 
Sbjct: 201 LIVIATPFIIKRVLKGETILHDTRLWLSGAIFIYFFSVAGTMHNIIRKMPMFLQDRNDPN 260

Query: 455 --VYINGGSHGQFVLESYIVAILNGPVVVGMIL 363
             V+   GS  Q   E + V  L    VVG++L
Sbjct: 261 KLVFFYQGSGMQLGAEGFAVGFLY--TVVGLLL 291


>At1g11560.1 68414.m01327 OST3/OST6 family protein contains Pfam
           profile PF04756: OST3 / OST6 family
          Length = 343

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -3

Query: 575 LYNKQLWAVCAVFFCFAMVSGQMWNQIRGPPFF---HRTKTGPVYINGGSHGQFVLESYI 405
           L++ ++W V AVF  F  VSG M N IR  P +   +   +  V+    S  Q   E + 
Sbjct: 216 LHDHRIWLVGAVFVYFFSVSGTMHNIIREMPMYIKDYEDSSKFVFFIEESEMQLGAEGFF 275

Query: 404 VAILNGPVVVGMIL 363
           V  L    VVG++L
Sbjct: 276 VGFLY--TVVGLLL 287


>At2g43440.1 68415.m05399 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 791

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 548 CAVFFCFAMVSGQMWNQIRGPPFFHRTKTGPVYINGGSHGQFVLESYIVAILN 390
           C  F    + SG+ W+++  PP   R  +  V +NG  +   +  SYI+  L+
Sbjct: 549 CYEFGILDIESGE-WSKLMSPPHIMRVGSKSVCVNGSIYWLQISVSYIILALD 600


>At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 579

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 285 LEPSTLPFGQGSCWVMVFNSTCC 353
           LEP T+     SCWV+ F    C
Sbjct: 409 LEPPTVLLVDNSCWVLAFTGAFC 431


>At5g01810.1 68418.m00100 CBL-interacting protein kinase 15 (CIPK15)
           identical to CBL-interacting protein kinase 15
           [Arabidopsis thaliana] gi|13249134|gb|AAK16692;
           identical to novel serine/threonine protein kinase
           [Arabidopsis thaliana] gi|1777312|dbj|BAA06311; contains
           Pfam profiles PF00069: Protein kinase domain and
           PF03822: NAF domain
          Length = 421

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 629 LFIILAGFLYIRRNNLEFLYNK 564
           LF++LAG+L  R +NL  LY K
Sbjct: 202 LFVLLAGYLPFRDSNLMELYKK 223


>At4g27585.1 68417.m03962 band 7 family protein similar to
           stomatin-like protein [Zea mays] GI:7716464; contains
           Pfam profile PF01145: SPFH domain / Band 7 family
          Length = 411

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 181 SHL-NKKLYGYPCVFALNTDKSSEKNTQTNIRPTTDWNLRRFPSARVRVGSWFLTPPAAS 357
           +HL  K   GY  + +++  + S   +   I       +R+F SA     S+ LTPP   
Sbjct: 2   NHLVRKSSVGYSALRSVSYLRQSAVTSPPPIFSAAASTVRQFTSAGYPSNSFQLTPPTNW 61

Query: 358 IIRIIP 375
            IRI+P
Sbjct: 62  GIRIVP 67


>At3g23780.1 68416.m02989 DNA-directed RNA polymerase family protein
           similar to SP|P38420 DNA-directed RNA polymerase II 135
           kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit
           2) {Arabidopsis thaliana}; contains Pfam profiles
           PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
           polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
           domain 3, PF04566: RNA polymerase Rpb2 domain 4,
           PF04567: RNA polymerase Rpb2 domain 5
          Length = 946

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 446 LYRPGQFLFYGKMVGL*FDSTSAQTPLQSRRTQHKLP 556
           L+   + L  G  VGL  DS S    L+SRR Q +LP
Sbjct: 346 LFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELP 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,735,819
Number of Sequences: 28952
Number of extensions: 321303
Number of successful extensions: 742
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)