Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1662
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    26   3.3  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    25   5.8  

>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 305 SLVTSQRTNLLELQLNKQVCAALTITGVYTPPVQNTGNNYYG 430
           SL    R  LL+ +  + V A LT+   YTP   N     +G
Sbjct: 90  SLKAGDRVALLDPRDGQTVIAILTVEDKYTPDKANEAEKVFG 131


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 341 VPEGSFSVTSRVMYRSRVPVEVRM*VRFASRAASSYRHTHQL 216
           VP  ++  + R++Y S +P E+    +F S      ++ H+L
Sbjct: 305 VPVHAYLASKRILYPSIIPEEIFFMRKFDSSLFKDIKNIHEL 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,693
Number of Sequences: 5004
Number of extensions: 44607
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)