Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1662
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U61946-4|AAC24394.1|  337|Caenorhabditis elegans Serpentine rece...    28   5.3  

>U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical
           protein F45F2.10 protein.
          Length = 980

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +1

Query: 199 ERSTVPSWCVWRYDDAARLANLTYIRT-----STGTLLRYITRDVTENEPSGTTTK*ASL 363
           +++ V S C  R+D  +R A +TY+ T     ST   L     DVTE          AS 
Sbjct: 425 KQNYVFSDCFPRFDSLSRQARITYVVTQTLDWSTNLFLEKFEDDVTEERACSILMHLAST 484

Query: 364 C 366
           C
Sbjct: 485 C 485


>U61946-4|AAC24394.1|  337|Caenorhabditis elegans Serpentine
           receptor, class h protein223 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -1

Query: 260 FASRAASSYRHTHQLGTVDLSISIISI*TCNRVIEFFFLYCS-KVYDFIMIYY 105
           F  +A  +Y H     T+D+   +I   T    I FF ++     Y F   YY
Sbjct: 221 FIIKALRNYGHNRSQRTIDMQKKLIQAITLQLAIPFFIIFIPISYYTFSNSYY 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,907,367
Number of Sequences: 27780
Number of extensions: 250403
Number of successful extensions: 455
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)