Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1661
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    28   0.95 
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    26   3.8  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   6.7  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    25   6.7  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   6.7  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +3

Query: 372 TSGPVCNTTVLYPDHTGASHRRRPRHVLTDPSDPITFALDAFSSNTKASSGTPVTVLVEL 551
           T+GPV  TT +YP    AS+     +  T  S  ++ +    +S    SS TP+T  V  
Sbjct: 48  TNGPVPGTTTIYPTSNVASNTSE-NYPYTG-SKSLSSSSILSNSTISTSSSTPITASVPT 105

Query: 552 DKEV 563
              +
Sbjct: 106 SSSI 109


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -1

Query: 249 KTEKYVDVKLADRLAFLHTLLPIKLKHLCT 160
           +TE++V+ ++ D+L  L  L P+K+  LCT
Sbjct: 97  ETEEWVE-RVVDKLNRLERLKPLKILDLCT 125


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 423 ASHRRRPRHVLTDPSDPITFALDAFSSNTKASSGTPVTV 539
           ++ RRRP H  T         LDA SSNT  +S  P+TV
Sbjct: 274 SAKRRRPDHNHTS-------TLDASSSNTSLASTGPMTV 305


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 550 STKRSTCNLTD 582
           STK STCNLTD
Sbjct: 357 STKNSTCNLTD 367


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 487 NAKVIGSDGSVRTCLGRRR 431
           N++ +GS GS  T LGRRR
Sbjct: 3   NSRSVGSTGSNNTPLGRRR 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,291
Number of Sequences: 5004
Number of extensions: 47002
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)