Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1661
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100...    30   1.7  
02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133     28   5.2  
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386...    28   6.9  
04_03_0996 + 21533874-21534469,21534963-21535041                       28   6.9  
03_02_0459 + 8649448-8651994                                           27   9.2  

>06_03_1076 +
           27409107-27409204,27409731-27409835,27409915-27410032,
           27410180-27410230,27410328-27410419,27410558-27410657,
           27411018-27411137,27411227-27411295,27411468-27411514,
           27411597-27411652,27412293-27412333,27412570-27412675,
           27413891-27414023,27414096-27414645
          Length = 561

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 201 LHT-LLPIKLKHLCTFCKQTVLNGALFHK 118
           LHT + P+  K+    CK    NG LFHK
Sbjct: 16  LHTDMCPLTTKNFLKLCKMKYYNGCLFHK 44


>02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133
          Length = 474

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 363 DKRTSGPVCNTTVLYPDHTGASHRRRPRHVLTDPSDPITFALDAFSSNTKASSGT 527
           +KR   PV    V   + +    RRR R V+ D         D+ SS++ +S GT
Sbjct: 77  EKRGKNPVVYERVSSTESSSDDRRRRRRSVVPDTELDAVQLSDSSSSSSSSSDGT 131


>05_03_0218 -
           10437377-10437622,10437896-10438141,10438528-10438611,
           10438720-10438854
          Length = 236

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = -1

Query: 300 INTVS*TSFTYNIFR-FCKTEK-YVDVKLADRLAFLHTLLPIKLKHLCTFCKQTVLNGAL 127
           I  V+  S T  IF  F K  K +++ K+++++ FL+T  P   K +       +L  A 
Sbjct: 137 IIAVAILSNTPRIFESFWKIIKHFLEAKMSEKVKFLYTNNPESHKIVSEMFDMDLLETAF 196

Query: 126 FHKYSITINID 94
             + SITI+ID
Sbjct: 197 GGRNSITIDID 207


>04_03_0996 + 21533874-21534469,21534963-21535041
          Length = 224

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +3

Query: 363 DKRTSGPVCNTTVLYPDHTGASHRRRPRHVLTDPSDPITFALDAFSSNTKASSGTPVT 536
           D   +    + + L P    ++ RRR R +LT P+  ++    + SS++ +SS + ++
Sbjct: 4   DAAAAAAASSPSPLLPPAPPSAARRRRRRLLTSPNPSVSSTSTSSSSSSSSSSSSSLS 61


>03_02_0459 + 8649448-8651994
          Length = 848

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -3

Query: 229 CEVGRPPSVPSYAASNKIKTFMYVL*TNCIKRRALP*VFDNNKYRFKEHFYPSK--INKS 56
           C + R P + S     K     + L   C     +P  F  ++YRFKE+   S+  I+K 
Sbjct: 778 CSICRYPIIGSRFKETK---HSFSLCNRCYSEGKVPSAFKLDEYRFKEYGNESEALIDKC 834

Query: 55  QCF 47
            CF
Sbjct: 835 MCF 837


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,639,154
Number of Sequences: 37544
Number of extensions: 262876
Number of successful extensions: 573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)