Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1661
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78063-2|CAB01503.2|  275|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z83227-6|CAB54250.1| 1427|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z83227-5|CAB54251.1| 1400|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL021446-3|CAB54225.1| 1427|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL021446-2|CAB54226.1| 1400|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL031633-3|CAD56609.1|  545|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z81065-2|CAB02967.2|  310|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL023842-5|CAA19519.1|  393|Caenorhabditis elegans Hypothetical ...    28   6.2  
AL117195-5|CAB55012.1|  732|Caenorhabditis elegans Hypothetical ...    27   8.2  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    27   8.2  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    27   8.2  
AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z78063-2|CAB01503.2|  275|Caenorhabditis elegans Hypothetical
           protein F45D3.2 protein.
          Length = 275

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +3

Query: 414 HTGASHRRRPRHVLTDPSDPITFALDAFSSNTKASSGTPVT----VLVELDKEVDVQPNR 581
           H     +RR R    +PS PIT +    SSN+  SS +  T     LVE D + DV PN+
Sbjct: 142 HGKDQEKRRKRTRKMEPSLPITTSTITCSSNSSPSSSSITTSVLRTLVE-DDDADVHPNK 200

Query: 582 CVSPL 596
            V P+
Sbjct: 201 -VRPI 204


>Z83227-6|CAB54250.1| 1427|Caenorhabditis elegans Hypothetical
           protein F14F4.3b protein.
          Length = 1427

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -2

Query: 476 YWV*-WIRKNVSRASTVTGSCVIRIQNCSITDRPTCSFVYLTYSINTIRFTIQG 318
           YW+  W++K     +T+T          S+ D P   F    Y +  +  TI G
Sbjct: 799 YWLSRWLKKGHDETTTITNGTEFLEMKTSLADSPVTGFYAAVYLVALVVLTISG 852


>Z83227-5|CAB54251.1| 1400|Caenorhabditis elegans Hypothetical
           protein F14F4.3a protein.
          Length = 1400

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -2

Query: 476 YWV*-WIRKNVSRASTVTGSCVIRIQNCSITDRPTCSFVYLTYSINTIRFTIQG 318
           YW+  W++K     +T+T          S+ D P   F    Y +  +  TI G
Sbjct: 772 YWLSRWLKKGHDETTTITNGTEFLEMKTSLADSPVTGFYAAVYLVALVVLTISG 825


>AL021446-3|CAB54225.1| 1427|Caenorhabditis elegans Hypothetical
           protein F14F4.3b protein.
          Length = 1427

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -2

Query: 476 YWV*-WIRKNVSRASTVTGSCVIRIQNCSITDRPTCSFVYLTYSINTIRFTIQG 318
           YW+  W++K     +T+T          S+ D P   F    Y +  +  TI G
Sbjct: 799 YWLSRWLKKGHDETTTITNGTEFLEMKTSLADSPVTGFYAAVYLVALVVLTISG 852


>AL021446-2|CAB54226.1| 1400|Caenorhabditis elegans Hypothetical
           protein F14F4.3a protein.
          Length = 1400

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -2

Query: 476 YWV*-WIRKNVSRASTVTGSCVIRIQNCSITDRPTCSFVYLTYSINTIRFTIQG 318
           YW+  W++K     +T+T          S+ D P   F    Y +  +  TI G
Sbjct: 772 YWLSRWLKKGHDETTTITNGTEFLEMKTSLADSPVTGFYAAVYLVALVVLTISG 825


>AL031633-3|CAD56609.1|  545|Caenorhabditis elegans Hypothetical
           protein Y39A1A.5 protein.
          Length = 545

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 282 TSFTYNIFRFCKT--EKYVDVKLADRLAFLHTLLPIKLKHLCTFCKQTV 142
           ++F Y+IF FC    E+  D+ L DR+  LH +    L+    F KQTV
Sbjct: 233 STFCYSIF-FCANHEEEVADMSLQDRIRSLHWVTAGFLETKMVFKKQTV 280


>Z81065-2|CAB02967.2|  310|Caenorhabditis elegans Hypothetical
           protein F16C3.2 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = -1

Query: 348 NKYNSIYNSRINTILSINTVS*TSF--TYNIFRFCKTEKYVDVKLADRLAFLHTLLPIKL 175
           NK NS+YNS I T+ S+       F  T     + +  K +  K   RL  L  L+ +  
Sbjct: 210 NKINSVYNSAIQTVKSLKERREQVFTDTMKFINYAEGSKCLAFKKM-RLCLLEQLVTVCG 268

Query: 174 KHLCTFCKQTVLNGALFHKYSITINIDLK 88
                    T+  G L  + SI + +D +
Sbjct: 269 VQTARALNTTLSVGYLASERSIRLQLDFE 297


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 411 DHTGASHRRRPRHVLTDPSDP 473
           DHTG +HRRR R    DP+DP
Sbjct: 268 DHTGHNHRRR-RSEDHDPNDP 287



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 411 DHTGASHRRRPRHVLTDPSDP 473
           DHTG +HRRR R    DP+DP
Sbjct: 179 DHTGHNHRRR-RSDDHDPNDP 198



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 411 DHTGASHRRRPRHVLTDPSD 470
           DHTG +HRR+  H   DPSD
Sbjct: 201 DHTGHNHRRKRNHD-DDPSD 219



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 411 DHTGASHRRRPRHVLTDPSDP 473
           DHTG +HRRR R    DP+DP
Sbjct: 223 DHTGHNHRRR-RSDDHDPNDP 242



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 411 DHTGASHRRRPRHVLTDPSDP 473
           DHTG +HRRR R    DP+DP
Sbjct: 312 DHTGHNHRRR-RSDDHDPNDP 331


>AL023842-5|CAA19519.1|  393|Caenorhabditis elegans Hypothetical
           protein Y44A6D.5 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 495 FSSNTKASSGTPVTVLVELDKEVDVQPNRCVSPLS 599
           F S T A+ G PV+ +V  DKE+DV  N  +  LS
Sbjct: 328 FVSGTAANVG-PVSEIVYCDKELDVMENLQIPTLS 361


>AL117195-5|CAB55012.1|  732|Caenorhabditis elegans Hypothetical
           protein Y57A10A.7 protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 186 EAAYEGTLGGLPTSHPHTFLFYRI 257
           E  Y G+L GLP   P  F FY+I
Sbjct: 518 EVEYNGSLPGLPKPEPIDFDFYQI 541


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           a protein.
          Length = 1650

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 444 RHVLTDPSDPITFALDAFSSNTKASSGTPVTVLVELDKEVDVQPNRCVSPL 596
           RHV     + I   L +   NT A +GT VT+   +DK   VQ  + ++PL
Sbjct: 394 RHVAEHKDEKIAEQLRSIYFNTLALAGTRVTIQQFVDK---VQSRKNIAPL 441


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           c protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 444 RHVLTDPSDPITFALDAFSSNTKASSGTPVTVLVELDKEVDVQPNRCVSPL 596
           RHV     + I   L +   NT A +GT VT+   +DK   VQ  + ++PL
Sbjct: 394 RHVAEHKDEKIAEQLRSIYFNTLALAGTRVTIQQFVDK---VQSRKNIAPL 441


>AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical
           protein M116.5 protein.
          Length = 1064

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 115 FDNNKYRFKEHFYPSKINKSQCFFF 41
           +  +K  F+ +++  K +K QCFFF
Sbjct: 806 YRRSKSNFRGYYFSKKQSKKQCFFF 830


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,322,526
Number of Sequences: 27780
Number of extensions: 262910
Number of successful extensions: 684
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)