Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1660
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    32   0.060
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    27   1.7  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    27   3.0  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   9.1  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 32.3 bits (70), Expect = 0.060
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -2

Query: 607 NWNCKFVHYYDCILYFYNHKFRQDYTIKNINKDKQYLIYSQFDNRRQEQ 461
           NW C  +  +   ++     FR+ Y + NI   K   +YS  ++ +Q +
Sbjct: 188 NWTCLSIENFGISIHVITKNFREYYKLDNIEHVKDETLYSDLEHGKQSR 236


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +2

Query: 224 WSWP*NRLFFIVHRHLFLS---AAECRASCTV 310
           W W   RL FI+H  L  S   +  C+ +C V
Sbjct: 82  WDWSIKRLTFILHERLISSRGVSQTCKCNCAV 113


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 347 VGFLPLGRLPSTFPVTFYTHYIPF 418
           +  +P G +PST    +YT+ +PF
Sbjct: 269 IRLIPKGSMPSTGSAKYYTNRVPF 292


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 568 LYFYNHKFRQDYTIKNINKDKQYLIYSQFDNRRQEQ 461
           L +YN   RQ     N+N +K   I+S  +   +EQ
Sbjct: 226 LSYYNGSVRQASMNNNVNNNKSKDIWSSSNTEEREQ 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,309
Number of Sequences: 5004
Number of extensions: 57027
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)