Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1660
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872...    29   2.3  
04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029     29   3.1  
12_01_0862 + 8161117-8163913,8164000-8164019                           28   7.1  
10_01_0145 - 1708597-1708824,1710225-1710468,1711217-1711263,171...    27   9.4  

>02_05_1305 -
           35586499-35586601,35586963-35587034,35587111-35587232,
           35587767-35587826,35587919-35587997,35588219-35588307,
           35588405-35588492,35591761-35591821,35592546-35592890,
           35593094-35594351
          Length = 758

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 201 GFLITEGRGHGLETDCFL*CTAICSYL 281
           G +  E +G GLE DC +  T  C+YL
Sbjct: 480 GNVFNEMQGKGLEADCLVYATLACAYL 506


>04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029
          Length = 677

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 363 RGRNPTRWTDQIRAALDTTVHDA-LHSAA 280
           +  NP +W D++R AL+T    A LHSAA
Sbjct: 442 QNENPLKWKDRLRIALETARAIAYLHSAA 470


>12_01_0862 + 8161117-8163913,8164000-8164019
          Length = 938

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 311 VSRAARIWSVQRVGFLPLGRLPSTFPVTFYTHYI 412
           VSR AR   V  +G +P+ +LP      F  HY+
Sbjct: 577 VSRTARYLKVLELGSVPIRKLPRDIGNLFNLHYL 610


>10_01_0145 -
           1708597-1708824,1710225-1710468,1711217-1711263,
           1711767-1711857,1712982-1713094,1713387-1713462,
           1713501-1713560,1713759-1713835,1714105-1714672,
           1715332-1715509,1715632-1715774,1717255-1717424,
           1717588-1717822,1718565-1718779
          Length = 814

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +2

Query: 239 NRLFFIVHRHLFLSAAECRASCTVVSRAARIWSVQRVGFLPLGRLPSTFPVTFYTHYIPF 418
           N LF  +H  LFL   E       +    R+W  + +       + STF  TF T  I +
Sbjct: 508 NSLFVTIHHMLFLDFTEILIPIEFI----RLWKFEGINMFNANPVGSTFGPTFQTLIINY 563


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,995,243
Number of Sequences: 37544
Number of extensions: 368839
Number of successful extensions: 872
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)