Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1660
(632 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 35 0.056
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 35 0.056
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 34 0.074
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 34 0.074
Z79754-1|CAB02090.1| 457|Caenorhabditis elegans Hypothetical pr... 32 0.39
Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical pr... 31 0.69
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 31 0.91
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 3.7
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 3.7
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 28 6.4
U56961-3|AAK39294.1| 634|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 28 6.4
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 28 6.4
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 28 6.4
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 28 6.4
AF000195-2|AAC24267.1| 316|Caenorhabditis elegans Hypothetical ... 27 8.4
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 34.7 bits (76), Expect = 0.056
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Frame = -3
Query: 372 KRPRGRNPTRWTDQIRAALDTTVHDA------LHSAADRNRWRCTIKNN 244
KRP GR P RWTD +R + T D A DR +W I+ N
Sbjct: 1014 KRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQWLAVIRRN 1062
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 34.7 bits (76), Expect = 0.056
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Frame = -3
Query: 372 KRPRGRNPTRWTDQIRAALDTTVHDA------LHSAADRNRWRCTIKNN 244
KRP GR P RWTD +R + T D A DR +W I+ N
Sbjct: 753 KRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQWLAVIRRN 801
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 34.3 bits (75), Expect = 0.074
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = -3
Query: 372 KRPRGRNPTRWTDQIRAALDTTVHDA------LHSAADRNRWRCTIKNN 244
KRP GR P RWTD +R + T D A DR W I+ N
Sbjct: 839 KRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKEWLAVIRRN 887
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 34.3 bits (75), Expect = 0.074
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = -3
Query: 372 KRPRGRNPTRWTDQIRAALDTTVHDA------LHSAADRNRWRCTIKNN 244
KRP GR P RWTD +R + T D A DR W I+ N
Sbjct: 365 KRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKEWLAVIRRN 413
>Z79754-1|CAB02090.1| 457|Caenorhabditis elegans Hypothetical
protein F25H2.1 protein.
Length = 457
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 109 FFSLFSISVENFTLLRPRNFRKKGYKVFASHINI 8
FF L + ++ T +PR FRK+ YKV IN+
Sbjct: 225 FFQLKYLPIKRITHCQPRRFRKQLYKVIIFRINV 258
>Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical
protein C07A9.10 protein.
Length = 254
Score = 31.1 bits (67), Expect = 0.69
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Frame = -3
Query: 372 KRPRGRNPTRWTDQIRAALDT------TVHDALHSAADRNRWRCTIK 250
KRP G+ P RWTD +R + T + A DR W+ I+
Sbjct: 14 KRPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWKAVIR 60
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 30.7 bits (66), Expect = 0.91
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Frame = -3
Query: 372 KRPRGRNPTRWTDQIRAALDTTVHDAL--------HSAADRNRWRCTIK 250
KRP GR P RW D +R + T DA A DR W+ I+
Sbjct: 150 KRPVGRPPMRWNDSLRK--EVTTRDAFGQVKQLWSTQAKDRKAWKAVIR 196
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -2
Query: 352 PDPLDGPDSCSPGYHSARCSALSC--R*EQMAVHYK 251
PDP C+ GYH C ++C EQ +YK
Sbjct: 348 PDPDGNLCECAAGYHGTNCQDVTCPLNWEQYLTNYK 383
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -2
Query: 352 PDPLDGPDSCSPGYHSARCSALSC--R*EQMAVHYK 251
PDP C+ GYH C ++C EQ +YK
Sbjct: 348 PDPDGNLCECAAGYHGTNCQDVTCPLNWEQYLTNYK 383
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -2
Query: 352 PDPLDGPDSCSPGYHSARCSALSC--R*EQMAVHYK 251
PDP C+ GYH C ++C EQ +YK
Sbjct: 348 PDPDGNLCECAAGYHGTNCQDVTCPLNWEQYLTNYK 383
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -2
Query: 403 CVKSHWKGRGQATKRQEP----DPLDGPDSCSPGYHSARCS 293
CV H+ + + T E DP+ G SC PG+ +C+
Sbjct: 1201 CVSGHYGAKCEETCECENGALCDPISGHCSCQPGWRGKKCN 1241
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -2
Query: 403 CVKSHWKGRGQATKRQEP----DPLDGPDSCSPGYHSARCS 293
CV H+ + + T E DP+ G SC PG+ +C+
Sbjct: 1201 CVSGHYGAKCEETCECENGALCDPISGHCSCQPGWRGKKCN 1241
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 336 DQIRAALDTTVHDALHSAADRNRWRCTIKNNL 241
+Q+R T HD + + W C+I N+L
Sbjct: 142 EQVRILSSTAAHDEIRYKVNNASWICSINNSL 173
>U56961-3|AAK39294.1| 634|Caenorhabditis elegans Hypothetical
protein T19D7.4 protein.
Length = 634
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 586 HYYDCILYFYNHKFRQDYTIKNINKDKQ 503
H +D ILYFYN K +D T + K Q
Sbjct: 492 HIWDVILYFYNLKTGRDTTDAPVRKLSQ 519
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 349 DPLDGPDSCSPGYHSARCS 293
DP G C PGYH CS
Sbjct: 698 DPTTGECICEPGYHGKTCS 716
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 349 DPLDGPDSCSPGYHSARCS 293
DP G C PGYH CS
Sbjct: 698 DPTTGECICEPGYHGKTCS 716
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 349 DPLDGPDSCSPGYHSARCS 293
DP G C PGYH CS
Sbjct: 698 DPTTGECICEPGYHGKTCS 716
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 349 DPLDGPDSCSPGYHSARCS 293
DP G C PGYH CS
Sbjct: 698 DPTTGECICEPGYHGKTCS 716
>AF000195-2|AAC24267.1| 316|Caenorhabditis elegans Hypothetical
protein C32F10.4 protein.
Length = 316
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -2
Query: 226 PRPSVMRKPTQGGGVCVMFSLLM*CIFYALF*KSISIVHFFSLFSISVENFTLLRPRNFR 47
P P V GG V ++ S+LM C + L S +++ F + S F L R
Sbjct: 32 PEPRVFCGLPIGGAVGILGSILMICQIFGLLYPSPFVLYVFEISIGSAMMFVLSTGAKRR 91
Query: 46 KKGY 35
K Y
Sbjct: 92 KIAY 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,191,736
Number of Sequences: 27780
Number of extensions: 340258
Number of successful extensions: 771
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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