Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1660
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   4.3  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   5.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 365 GRLPSTFPVTFYTHYIPFI*R 427
           GRL S    + Y  YIPF+ R
Sbjct: 596 GRLTSKHDNSLYDEYIPFLER 616


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 568 KYNHNSAQTYNSN 606
           KYN+N+   YN+N
Sbjct: 97  KYNYNNKYNYNNN 109


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 346 PLDGPDSCSPGYHSARC 296
           P  G D+C+  Y+ A+C
Sbjct: 116 PTSGSDNCNKIYNLAKC 132


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 346 PLDGPDSCSPGYHSARC 296
           P  G D+C+  Y+ A+C
Sbjct: 116 PTSGSDNCNKIYNLAKC 132


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 265  AVHYKKQSVSRP*PRPSVMRKPTQGGG 185
            + H +  S S P       R P+QGGG
Sbjct: 1770 SAHSRSGSQSMPRQNGRYSRVPSQGGG 1796


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 257 VHRHLFLSAAECRASCTVVSR 319
           +HRH+ +   E    CTV S+
Sbjct: 163 LHRHMRIHTGERPHKCTVCSK 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,376
Number of Sequences: 438
Number of extensions: 4216
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)