Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1658
         (660 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q55A59 Cluster: Putative uncharacterized protein; n=3; ...    37   0.49 
UniRef50_Q23870 Cluster: D1 ORF; n=2; Dictyostelium discoideum|R...    36   0.86 
UniRef50_A5K2Z4 Cluster: Putative uncharacterized protein; n=1; ...    35   1.5  
UniRef50_Q55AG0 Cluster: Putative uncharacterized protein; n=2; ...    34   3.5  
UniRef50_O96256 Cluster: Putative uncharacterized protein PFB082...    33   6.1  
UniRef50_UPI0000EB38DB Cluster: Transcription intermediary facto...    33   8.0  

>UniRef50_Q55A59 Cluster: Putative uncharacterized protein; n=3;
            Eukaryota|Rep: Putative uncharacterized protein -
            Dictyostelium discoideum AX4
          Length = 1652

 Score = 36.7 bits (81), Expect = 0.49
 Identities = 20/67 (29%), Positives = 36/67 (53%)
 Frame = -3

Query: 571  RISGAINRSSYDLFSENVVLFVFSIINSSRHLLANNNTIFLN*GQLTALKTKQDGVIKKK 392
            +IS +I  +++  F      + FS++N +++ + NNN+IF N   ++   T+Q GV   K
Sbjct: 935  QISNSIFYNNFGKFGAVFSFYNFSLLNDTKYPIINNNSIFNNNSFISNTATQQGGVFYTK 994

Query: 391  THPVILN 371
                 LN
Sbjct: 995  NFLFNLN 1001


>UniRef50_Q23870 Cluster: D1 ORF; n=2; Dictyostelium discoideum|Rep:
            D1 ORF - Dictyostelium discoideum (Slime mold)
          Length = 1474

 Score = 35.9 bits (79), Expect = 0.86
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -3

Query: 658  SNFCIFNIYVYNLNHGKRARTIYIKFSIQRISGAINRSSYDLFSENVVLFVFSIINSSRH 479
            +N   FN++ Y LN  K    IY K +++  S  I   S+D F E++    + +   SRH
Sbjct: 1124 NNHFNFNVFQYFLNFLKATIQIYQKQTLEAYSDQILDESFDAFKESIASAHYCLDQVSRH 1183

Query: 478  LL 473
             L
Sbjct: 1184 TL 1185


>UniRef50_A5K2Z4 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 4440

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = -3

Query: 556  INRSSYDLFSENVVLFVFSIINSSRHLLANNNTIFLN*GQLTALKTKQDGVIKKKTHPVI 377
            ++ + Y L  + V+LF+ S+ N+   L+A N+ +  N  +L   K K+   I  KT+  +
Sbjct: 1372 VSLNKYQLVLDRVLLFLPSMTNNRNFLIAQNDVVIRNHIELKKKKKKKKIEILDKTYVYL 1431

Query: 376  LN 371
            LN
Sbjct: 1432 LN 1433


>UniRef50_Q55AG0 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 1002

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = -3

Query: 583 FSIQRISGAINRSSYDLFSENVVLFVFSIINSSRHLLANNNTIFLN*GQLTALKTKQD-G 407
           F++ R    +N+ +  LFS N  L ++S +++S     NNN   L+   ++++K+++D  
Sbjct: 458 FNVNRDEFDLNQQTLSLFSLNGYLHLYSFLDNSDFNYNNNNQDELSTSDISSIKSEEDED 517

Query: 406 VIKKKTHPVILNRKK 362
            IK     +   +KK
Sbjct: 518 FIKSSLDQIKQQQKK 532


>UniRef50_O96256 Cluster: Putative uncharacterized protein PFB0820c;
           n=3; Plasmodium|Rep: Putative uncharacterized protein
           PFB0820c - Plasmodium falciparum (isolate 3D7)
          Length = 1710

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
 Frame = -3

Query: 655 NFCIFNIYVYNLNHGKRARTI-YIKFSIQRISGAINRSSYDLFSE-NVVLFVFSIINSSR 482
           NF  FN +    N+G+ + +   + FS   I  +I     D++ + NVV     + N + 
Sbjct: 377 NFYFFNTFT---NNGQASSSFPSLSFSFNSIGSSIESDEGDMYKDTNVVHDKMEVYNHNN 433

Query: 481 HLLANNNTIFLN*GQLTALKTKQDGVIKKKTHPVILNRK 365
           +   NNN I+   G+  + K + + +I  K H  + N +
Sbjct: 434 N--NNNNYIYDKSGKAFSQKNEYEDIIITKDHTALNNHE 470


>UniRef50_UPI0000EB38DB Cluster: Transcription intermediary factor
           1-alpha (TIF1-alpha) (Tripartite motif-containing
           protein 24) (RING finger protein 82).; n=1; Canis lupus
           familiaris|Rep: Transcription intermediary factor
           1-alpha (TIF1-alpha) (Tripartite motif-containing
           protein 24) (RING finger protein 82). - Canis familiaris
          Length = 697

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 134 HNLICVI*SKRGGFEIKRNNSFCRMHRNFPFVTLNPTTKEKC 9
           H L+CV   K G  E+  ++ F  +     F+T NP    KC
Sbjct: 580 HKLMCVFSFKTGTKEVFHDSDFSFLQELLSFITYNPNCSRKC 621


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,887,999
Number of Sequences: 1657284
Number of extensions: 12265863
Number of successful extensions: 20407
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20404
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)