Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1658
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    25   0.73 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          25   0.73 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   0.96 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.8  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 619 NHGKRARTIYIKFSIQRISGAINRSSY 539
           ++GKRART Y    +  +    +RS Y
Sbjct: 83  SNGKRARTAYTSSQLVELEREFHRSKY 109


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 619 NHGKRARTIYIKFSIQRISGAINRSSY 539
           ++GKRART Y    +  +    +RS Y
Sbjct: 103 SNGKRARTAYTSSQLVELEREFHRSKY 129


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -2

Query: 305 RPNQEWRLIKHRTNESMTNWISY 237
           RP+ +W   K   N+ +  W+ Y
Sbjct: 233 RPHDQWAYEKLNVNDGLQLWVDY 255


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 569 PLYTKFYVNRPSPFP 613
           PL + FY+N   PFP
Sbjct: 320 PLKSTFYLNVVRPFP 334


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,893
Number of Sequences: 336
Number of extensions: 3439
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)