Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1658
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   7.3  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   7.3  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   9.7  

>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = -3

Query: 568 ISGAINRSSYDLFSENVVLFVFSI 497
           ++G++++ SY+LFS++   FV+ +
Sbjct: 1   MAGSVDKPSYELFSKDTRAFVYGM 24


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 362 FFSVKYYRMSFFFDNAILFCL 424
           F S K+ R +FF+D  +++C+
Sbjct: 693 FSSSKFCRENFFYDKDVVYCM 713


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 444 QLRKIVLLFANRCREELIIENTNKTTFSENKS*LDRFIAPEIL 572
           +L  I+L   N+   ELI +N    T  +  + L  +I+PEIL
Sbjct: 116 RLVSIILESNNKSNNELITKNGYGNTRLDLLNQLSEYISPEIL 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,136
Number of Sequences: 5004
Number of extensions: 57084
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)