Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1658
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0108 + 13481249-13481464,13484556-13484693,13485320-134853...    29   3.3  

>07_03_0108 + 13481249-13481464,13484556-13484693,13485320-13485388,
            13485462-13485599,13485685-13485802,13486265-13486347,
            13486921-13487013,13487801-13487969,13488056-13488129,
            13488448-13488633,13490009-13490101,13490469-13490534,
            13490618-13490785,13491199-13491319,13492072-13492141,
            13492389-13492476,13492565-13492685,13492964-13493157,
            13493239-13493347,13493488-13493643,13493858-13493957,
            13494115-13494288,13494549-13494694,13494796-13494860,
            13495013-13495018
          Length = 986

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 305  RPNQEWRLIKHRTNESMTNWISYS 234
            RPN EW L+  RTN S+ N    S
Sbjct: 961  RPNGEWMLVDKRTNLSLVNCFDLS 984


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,203,558
Number of Sequences: 37544
Number of extensions: 297912
Number of successful extensions: 428
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)