Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1658
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50301-1|AAB37051.1|  269|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z83234-6|CAB05770.2|  414|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U50301-1|AAB37051.1|  269|Caenorhabditis elegans Hypothetical
           protein F20D6.6 protein.
          Length = 269

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 207 INCYLKRAPIMTVLDSKWPTINAITQFNLRHLIQTGRVRN 88
           I   LKR P+MTVL+ K   +N +   N+++      V+N
Sbjct: 112 IKSLLKRLPVMTVLNRKLLCVNGMVTSNIKNEKNVVSVKN 151


>Z83234-6|CAB05770.2|  414|Caenorhabditis elegans Hypothetical
           protein K09E4.5 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -3

Query: 148 DKRYYTI*FASFNPNGEGSKLNGIIHFA----ECTVISHLSL*IR 26
           + RY+    ++FN +G+G+    I H       CTVI HL L  R
Sbjct: 232 EMRYFNREISNFNGSGDGASAKLIEHLEIYSNLCTVIRHLDLIFR 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,121,955
Number of Sequences: 27780
Number of extensions: 307724
Number of successful extensions: 574
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)