Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1658
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.5  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   7.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 220 TLIEHKLLSKTRANNDSSRFKMADDKRYYT 131
           T+++ K+ ++   N D +   ++ DK+ YT
Sbjct: 360 TILDSKVSARIEMNEDDNTSLVSLDKKQYT 389


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 574 QRISGAINRSSYDLFSENVVLFV 506
           Q+I   IN    ++  ENV+LF+
Sbjct: 41  QQIIDDINEGKINMDDENVLLFI 63


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 115 FNPNGEGSKLNGIIHFAE 62
           F+ NG+G     IIHF +
Sbjct: 530 FDKNGDGPARYNIIHFKQ 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,432
Number of Sequences: 438
Number of extensions: 3877
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)