Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1657
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0799 + 7035380-7036148,7036587-7037080 31 0.92
12_01_0731 - 6516894-6517473,6517485-6519574 30 1.2
12_01_0727 + 6446283-6449300 30 1.2
12_02_0895 + 24094809-24094886,24097197-24097402,24097493-24097919 30 1.6
11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219 30 1.6
02_01_0232 + 1543597-1543800,1544189-1544377,1544695-1544859,154... 30 1.6
01_01_0145 + 1327172-1327362,1327491-1328169 29 2.1
04_02_0008 + 8473198-8475523,8475618-8475967 29 2.8
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 29 3.7
12_01_0741 + 6649988-6653065 28 4.9
01_01_0418 - 3142659-3145622 28 6.5
11_01_0193 - 1534051-1534092,1536343-1537065 27 8.6
06_01_0310 - 2240745-2242130 27 8.6
>11_01_0799 + 7035380-7036148,7036587-7037080
Length = 420
Score = 30.7 bits (66), Expect = 0.92
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +3
Query: 186 GESINKTVKKDKDA---DNLLDQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQ--GYRQA 350
G+ K+ KK K+ NLL + +++ +++E P DC S+ Q G
Sbjct: 333 GKPRGKSAKKLKELAGITNLLSSGSILKESDFASDVHSETDSTPSDCSVSLLQKMGVEMC 392
Query: 351 KCSFLEIGTQKFGDDILDLV 410
S E+ K G LDLV
Sbjct: 393 GLSLEEVAESKLGGQKLDLV 412
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 504 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 596
NS G I P+ G+ L ++LSNNNL L
Sbjct: 633 NSISGNIPPSICDGIKSLQLIDLSNNNLTGL 663
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 504 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 596
NS G I P+ G+ L ++LSNNNL L
Sbjct: 626 NSISGNIPPSICDGIKSLQLIDLSNNNLTGL 656
>12_02_0895 + 24094809-24094886,24097197-24097402,24097493-24097919
Length = 236
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +2
Query: 5 SRHGRGARSHSAHCRSVKVQRLSTINYQRKAIV*SCSSSLRHGGKVPGVTTAPGSM 172
S HGR S R +QRL++++ + S SS HGG PGV+T S+
Sbjct: 66 SDHGRLPDSVQ-QARERLLQRLNSVDLSGRRQNTSLSSETIHGGVAPGVSTTADSI 120
>11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219
Length = 306
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 267 EYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKF 386
+ +E Y++ CP D C V Q + QAK L +QKF
Sbjct: 225 DLEECPYDDCDNCPSDNNCKVLQAFSQAKNLALVADSQKF 264
>02_01_0232 +
1543597-1543800,1544189-1544377,1544695-1544859,
1545199-1545459,1546059-1546271,1546365-1546587,
1547974-1548149
Length = 476
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 302 LSQRLHMLCISGIQTSQVQLPRNRY 376
L QRL +LCI G+ T +++ R+RY
Sbjct: 445 LMQRLTVLCIRGVSTYPIKIIRSRY 469
>01_01_0145 + 1327172-1327362,1327491-1328169
Length = 289
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 336 PEIQSICSLW-DRACPRCTKPLGIPRVR 256
P S W DRACP C +P+G R R
Sbjct: 70 PRAAPAASSWMDRACPSCNEPIGDIRCR 97
>04_02_0008 + 8473198-8475523,8475618-8475967
Length = 891
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 396 ILDLVVENADPRYPINLDDFMFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLS 575
+L+L V N D PI L + LGL + N+ + + P +H+L +N S
Sbjct: 383 MLNLSVNNLDGSIPIELVNISSLSLGLD------LSNNKLSGLIPQQVGTLHNLGHLNFS 436
Query: 576 NNNL 587
NN L
Sbjct: 437 NNQL 440
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -2
Query: 357 CTWLVCIPEIQSICSLWDRACPRCTKPLGIPRVRNPHI 244
C L C P IQ + R CP C P G VR I
Sbjct: 752 CFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSDVREVKI 789
>12_01_0741 + 6649988-6653065
Length = 1025
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 504 NSTIGYIAPNAFHGVHDLYAVNLSNNNL 587
NS +G + ++ + +LY +NLSNN L
Sbjct: 464 NSFVGIVELTSYSKLQNLYVLNLSNNKL 491
>01_01_0418 - 3142659-3145622
Length = 987
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 504 NSTIGYIAPNAFHGVHDLYAVNLSNNNL 587
N+ IG + ++F + DL+++NLSNN L
Sbjct: 431 NNFIGTLELSSFWKLPDLFSLNLSNNKL 458
>11_01_0193 - 1534051-1534092,1536343-1537065
Length = 254
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 357 SFLEI-GTQKFGDDILDLVVENADPRYPINLDDFMFKKL 470
SFL+ Q+ DD +DLV+ DP + I D ++ L
Sbjct: 118 SFLDCYARQQLFDDAVDLVLNQLDPLFGIQADTVVYNHL 156
>06_01_0310 - 2240745-2242130
Length = 461
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 399 LDLVVENA--DPRYPINLDDFMFKKL-GLHQVATVKIVNSTIGYIAPNAFHGV 548
LD+ EN D + L DF KL G Q V V T GY+AP GV
Sbjct: 236 LDVKPENILLDDGFRGVLSDFGLSKLVGKEQSRVVTTVRGTTGYLAPEWLLGV 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,758,374
Number of Sequences: 37544
Number of extensions: 325272
Number of successful extensions: 1080
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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