Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1657
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 29 2.5
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 28 5.8
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 28 5.8
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of... 28 5.8
AF022974-5|AAC48036.3| 347|Caenorhabditis elegans Seven tm rece... 28 5.8
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z66565-4|CAA91480.1| 384|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 27 7.7
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 27 7.7
AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna pol... 27 7.7
AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated... 27 7.7
AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymeras... 27 7.7
>Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical
protein K07A12.2 protein.
Length = 961
Score = 30.7 bits (66), Expect = 0.82
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = +3
Query: 306 PRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV-VENADPRYPINLDDFMFKKLGLHQ 482
P C C +S+ C+ ++ T I V D + +N D + L +
Sbjct: 27 PEKCDCKISKSMIILSCNGEDVKT------IAQTVGTSQIDELHILNGTDVKIESLPFNG 80
Query: 483 VATVKIVNSTIGYIAPNAFHGVH-DLYAVNLSNNNLKSL 596
+ T+ I+NST+ +P A+ V + + ++ N LK++
Sbjct: 81 LRTIAILNSTLQSFSPTAWRHVEATIEHITINGNELKTV 119
>Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical
protein M88.6b protein.
Length = 594
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 471 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 596
G+ + + + N + I AF G++ L + LSNNNL+++
Sbjct: 197 GMKNLKKLTLQNCNLEIIQKGAFRGLNSLEQLILSNNNLENI 238
>Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical
protein M88.6a protein.
Length = 610
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 471 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 596
G+ + + + N + I AF G++ L + LSNNNL+++
Sbjct: 197 GMKNLKKLTLQNCNLEIIQKGAFRGLNSLEQLILSNNNLENI 238
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 384 FGDDILDLVVENADPRYPI-NLDDFMFKKLGLHQVATVKIV-NSTIGYIAPNAFHGVHDL 557
FG L+ E PR+ I ++ MF++ +K + NS + Y+A N FH +
Sbjct: 2091 FGQTPSQLLTEAHPPRHSIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQP 2150
Query: 558 YAVNLSNNNLKSL 596
V ++ N + SL
Sbjct: 2151 TVVGVAQNLVFSL 2163
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
F10F2.1 protein.
Length = 2507
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 384 FGDDILDLVVENADPRYPI-NLDDFMFKKLGLHQVATVKIV-NSTIGYIAPNAFHGVHDL 557
FG L+ E PR+ I ++ MF++ +K + NS + Y+A N FH +
Sbjct: 2091 FGQTPSQLLTEAHPPRHSIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQP 2150
Query: 558 YAVNLSNNNLKSL 596
V ++ N + SL
Sbjct: 2151 TVVGVAQNLVFSL 2163
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 474 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 596
L + + + + I I P AF G+H+L+ + L NN+ L
Sbjct: 310 LKNLTRLDLSKNIITEIQPKAFLGLHNLHTLVLYGNNITDL 350
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 474 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 596
L + + + + I I P AF G+H+L+ + L NN+ L
Sbjct: 310 LKNLTRLDLSKNIITEIQPKAFLGLHNLHTLVLYGNNITDL 350
>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
constitutive dauerformation protein 2 protein.
Length = 1446
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 479 PGCYCKNREQHDWLYRPQCFPWCP 550
P CYC RE+H L + +C W P
Sbjct: 153 PDCYCGKREKHCDLSKEKCH-WTP 175
>AF022974-5|AAC48036.3| 347|Caenorhabditis elegans Seven tm
receptor protein 208 protein.
Length = 347
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -3
Query: 419 VFDHEIKDIIAELLCTDFEEAALGLSVSLRYRAYAVSGTGPVLVVQNLLVF 267
+ +++ ++ L C F + SV YR +AVSG + + + +F
Sbjct: 83 LLSYDVLLLLVSLCCAFFGSLMVMFSVQFIYRFWAVSGNNSIKTFEGVRIF 133
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 530 QCFPWCP*PLRSQPIQQQPKEPL 598
Q FP P PL SQP QQQP P+
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPI 369
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 530 QCFPWCP*PLRSQPIQQQPKEPL 598
Q FP P PL SQP QQQP P+
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPI 369
>Z66565-4|CAA91480.1| 384|Caenorhabditis elegans Hypothetical
protein T04F8.4 protein.
Length = 384
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -1
Query: 460 NMKSSRLIG*RGSAFSTTRSRISSPNFCVPISRKLHLACLY 338
NM R+I G FST P F + + H+ C+Y
Sbjct: 93 NMDRQRMIAPEGMMFSTVLIISFHPLFLTRMDKAYHIRCMY 133
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 530 QCFPWCP*PLRSQPIQQQPKEPL 598
Q FP P PL SQP QQQP P+
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPI 369
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 530 QCFPWCP*PLRSQPIQQQPKEPL 598
Q FP P PL SQP QQQP P+
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPI 369
>AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna
polymerase eta) homologprotein 1 protein.
Length = 584
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 467 TRTSPGCYCKNREQHDWLY 523
TR PG +NR H+WLY
Sbjct: 426 TRFQPGIPAQNRSIHEWLY 444
>AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated
ion channel protein 10 protein.
Length = 493
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -2
Query: 417 FRPRDQGYHRRTFVYRFRGSCTWLVC--IPEIQSICSLWD 304
+R R R YRF C L+ +PEIQSIC + +
Sbjct: 386 YRKRRSTVFRGVHNYRFNQECDDLMYSKVPEIQSICMMME 425
>AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymerase
eta protein.
Length = 584
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 467 TRTSPGCYCKNREQHDWLY 523
TR PG +NR H+WLY
Sbjct: 426 TRFQPGIPAQNRSIHEWLY 444
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,262
Number of Sequences: 27780
Number of extensions: 280827
Number of successful extensions: 884
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -