Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1656
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   0.53 
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    24   5.0  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    24   6.6  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    23   8.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    23   8.7  

>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 204 SHQFWARLLELVERQLRP 151
           SH FW + LE  ERQ RP
Sbjct: 143 SHPFWDKYLEFEERQERP 160


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 153 PFPPPLASPNSQPRRLCTIVRP 88
           P PPP+    + P  L TI+ P
Sbjct: 160 PAPPPMMKKPAAPNSLSTIIYP 181


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -3

Query: 204 SHQFWARLLELVERQLRPFPPPLASPNSQPR 112
           ++QF A ++  +E+ L   PPP ASPNS+P+
Sbjct: 300 TYQF-AEVVSCLEKTL---PPP-ASPNSEPQ 325


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 168 ERQLRPFPPPLASPNSQ 118
           E  L P PPP + P SQ
Sbjct: 321 EDNLSPLPPPASGPYSQ 337


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 207  PSHQFWARLLELVERQLRPFPPPLASPN 124
            PSHQ      E   +Q  P  PP  +PN
Sbjct: 988  PSHQHGFDTAETTAKQYAPSIPPNFNPN 1015


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,033,806
Number of Sequences: 5004
Number of extensions: 15633
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)