Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1656
         (320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685...    30   0.47 
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133...    28   1.4  
10_08_0842 - 20954712-20957738                                         28   1.9  
07_03_1113 - 24068441-24068923                                         27   3.3  
12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133...    27   4.3  
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113...    27   4.3  
08_01_0559 + 4938373-4938524,4938886-4938964,4939046-4939138,494...    26   5.7  
03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331...    26   5.7  
01_01_0039 + 302332-302471,302981-303509,304345-304389,304572-30...    26   5.7  
06_02_0299 - 13969269-13969366,13969614-13969729,13970753-13970838     26   7.6  
03_06_0392 - 33583375-33583554,33583646-33584126,33584211-33584452     26   7.6  
03_02_0036 + 5182345-5183511                                           26   7.6  

>10_06_0171 +
           11466934-11466990,11467073-11468312,11468450-11468596,
           11469650-11470140
          Length = 644

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 74  HI*DEGLTIVHSLRGCEFGDASGGGKGRSCRSTNSRSRAQ 193
           H  + G  +  + R  E G++SG G G+S RST +   AQ
Sbjct: 349 HAMEHGDCVARAPRALEIGESSGKGHGKSKRSTAADEVAQ 388


>10_06_0085 +
           10511258-10512327,10512978-10513058,10513318-10513396,
           10514160-10514201
          Length = 423

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 57  RRVTGSIF--KMKVLLLCIAFAAVSLAMPVAEEKDVVAAQPI 176
           RRV+G +F      LL+C   AA   A PVA      A+ P+
Sbjct: 219 RRVSGIVFLTSFAALLVCSVVAAAIAAPPVAAALAAAASMPV 260


>10_08_0842 - 20954712-20957738
          Length = 1008

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +3

Query: 27  NNLCQCFKKRRRV--TGSIFKMKVLLLCIAFAAVSLAMPVAEEKDVVAAQPILEVAP 191
           ++ C+  +  +RV   G ++K ++LLLC A   ++ A  + + +D  A +P + + P
Sbjct: 560 HSACRTNRAGQRVLPNGHVWKPQLLLLCFASKVLAEANALLKLQDNPAGKPRMRIPP 616


>07_03_1113 - 24068441-24068923
          Length = 160

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 104 HSLRGCEFGDASGGGKGRSCRSTNSRS 184
           H+  G E G   GGG  R CR    RS
Sbjct: 26  HAGDGAEVGSGRGGGPQRRCRRMGPRS 52


>12_01_0180 -
           1335825-1335980,1336584-1336670,1336767-1336859,
           1336985-1337057,1337153-1337247,1337917-1338004,
           1338135-1338424
          Length = 293

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -3

Query: 180 LELVERQLRPFPPPLASPNSQPRRLCTIVRPSS 82
           L LV R   P P P A P    RRL    RP+S
Sbjct: 9   LLLVHRSTPPTPRPTAPPLLHSRRLALPPRPAS 41


>02_01_0163 +
           1135592-1135623,1135718-1135816,1135904-1135960,
           1136053-1136116,1136174-1136392,1138562-1138945
          Length = 284

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 165 RQLRPFPPPLASPNSQP 115
           RQ+ P PPP+ SP++ P
Sbjct: 171 RQVNPAPPPVPSPSAPP 187


>08_01_0559 +
           4938373-4938524,4938886-4938964,4939046-4939138,
           4941197-4941271,4942328-4942401,4943229-4943284,
           4943293-4943552,4945456-4945590
          Length = 307

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 32  FVSVF*KAASRHRIHI*DEGLTIVHSLRGCEFGDASGGGKGRSC 163
           + S F +   R+R++  D  ++     RG  F    GGGK   C
Sbjct: 91  YASKFLRVNGRYRVNAEDGPISSFAEKRGSFFSGPDGGGKWLKC 134


>03_05_0732 -
           27232299-27232535,27232717-27232746,27233094-27233155,
           27233975-27234005,27234618-27234713,27234881-27234969,
           27235687-27236263
          Length = 373

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 207 PSHQFWARLLELVERQLRPFPPPLASPNSQ 118
           P +  W R L L+  Q  P PPP   P  Q
Sbjct: 38  PLNSVWIRRLHLLPHQPPPPPPPPPLPQPQ 67


>01_01_0039 +
           302332-302471,302981-303509,304345-304389,304572-304718,
           304834-304899,304993-305058,305171-305257
          Length = 359

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 180 LELVERQLRPFPPPLASPNSQPRRLCTIV 94
           L+ VE QL    PP  SP+ Q  +L T++
Sbjct: 62  LQSVESQLAAAAPPTLSPHLQAHQLSTVL 90


>06_02_0299 - 13969269-13969366,13969614-13969729,13970753-13970838
          Length = 99

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 129 AMPVAEEKDVVAAQPILEVAPK 194
           ++PV  +K VVAAQP L + P+
Sbjct: 59  SLPVIADKSVVAAQPNLWLLPR 80


>03_06_0392 - 33583375-33583554,33583646-33584126,33584211-33584452
          Length = 300

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 110 LRGCEFGDASGGGKG-RSCRSTNSRS 184
           LR    GD  GGG G   CR T +RS
Sbjct: 260 LRAIFSGDGGGGGGGGAKCRETKARS 285


>03_02_0036 + 5182345-5183511
          Length = 388

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +3

Query: 39  QCFKKRRRVTGSIFK--MKVLLLCIAFAAVSLAMPVAEEKDVVAAQPILEVAPKID 200
           +  K  RRV+  IF      +L+C   AA   A PVA      A+ P+  +   ID
Sbjct: 223 RAIKAWRRVSSIIFATTFAAVLICSVVAAAIAAPPVAAALAAAASIPVGSMGKWID 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,062,952
Number of Sequences: 37544
Number of extensions: 120538
Number of successful extensions: 592
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)