Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1656
         (320 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047657-6|AAK18946.1|  337|Caenorhabditis elegans Serpentine re...    26   7.0  
Z81142-4|CAB03506.1|  338|Caenorhabditis elegans Hypothetical pr...    25   9.2  
U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine rece...    25   9.2  

>AF047657-6|AAK18946.1|  337|Caenorhabditis elegans Serpentine
           receptor, class h protein243 protein.
          Length = 337

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +3

Query: 96  LLCIAFAAVSLAMPV 140
           LLCIAFA++ LA+P+
Sbjct: 196 LLCIAFASLFLAVPI 210


>Z81142-4|CAB03506.1|  338|Caenorhabditis elegans Hypothetical
           protein ZK1037.7 protein.
          Length = 338

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 6   IKLIFYFNNLCQCF-KKRRRVTGSIFKMKVLLLCIAFAAVS 125
           I  +F FN +   F    + +T  +F +   L CI FAA+S
Sbjct: 273 IDAMFQFNAVLDSFIYNSKSITSILFTINSTLHCIIFAALS 313


>U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein244 protein.
          Length = 336

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 90  VLLLCIAFAAVSLAMPV 140
           V LLCIAFA + LA+P+
Sbjct: 194 VPLLCIAFAILFLAVPI 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,785,514
Number of Sequences: 27780
Number of extensions: 93092
Number of successful extensions: 299
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)