Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1655
(398 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 199 1e-52
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 108 4e-25
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 91 4e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 58 4e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 54 6e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 48 5e-07
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 46 3e-06
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.066
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.15
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.46
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 1.1
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 1.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.4
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 2.5
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 2.5
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.5
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 4.3
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.7
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 5.7
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 24 10.0
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 24 10.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 199 bits (486), Expect = 1e-52
Identities = 87/93 (93%), Positives = 91/93 (97%)
Frame = +2
Query: 119 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 298
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 299 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 397
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNEL
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNEL 94
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 108 bits (259), Expect = 4e-25
Identities = 45/86 (52%), Positives = 63/86 (73%)
Frame = +2
Query: 137 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 316
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 317 KYPIEHGIVTNWDDMEKIWHHTFYNE 394
+ PIE GI+ NW DME+IW + + ++
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQ 97
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 91.5 bits (217), Expect = 4e-20
Identities = 42/93 (45%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Frame = +2
Query: 125 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 298
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 299 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 397
R +L +KYP+E+GI+ ++++M ++W +TF+ +L
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKL 94
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.4 bits (135), Expect = 4e-10
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 24/111 (21%)
Frame = +2
Query: 137 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 265
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 266 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 397
D ++G++A K +L YPI HG + NWD ME+ W + + L
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYL 117
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.4 bits (125), Expect = 6e-09
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +2
Query: 137 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 316
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 317 -KYPIEHGIVTNWDDMEKIWHHTF 385
+ P E +++NWD ME++ +TF
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTF 106
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 48.0 bits (109), Expect = 5e-07
Identities = 29/92 (31%), Positives = 47/92 (51%)
Frame = +2
Query: 122 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 301
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 302 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 397
G + +K I +G V NWD +W + +L
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQL 92
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 45.6 bits (103), Expect = 3e-06
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Frame = +2
Query: 122 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 301
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 302 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 397
I + +K +GI+ +W+ W +L
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKL 95
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.066
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 182 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 325
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.15
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 279 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 118
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.46
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 290 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 201
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 1.1
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -2
Query: 319 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 140
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 1.4
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +2
Query: 137 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 316
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 317 KYPIEH--GIVTNWDDMEKIW 373
++ H G + +W +W
Sbjct: 58 QFRRAHEKGYLVHWSTETAVW 78
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 1.4
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 282 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 166
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 2.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 164 TYRSHCLLPTRQLLRRTS*ISEI 96
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 2.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 319 FEGQDTSFALCLISYIRVLLSHTDHHA 239
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.5
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 323 PIEHGIVTNWDDMEKIWHHTF 385
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 242 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 328
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 5.7
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 149 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 301
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 5.7
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 139 QRGNFFVAHLEL-VKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPC 2
++ +F ++E V+++ CRC K P ++ + + CPC
Sbjct: 486 EKRKYFEINIETPVRILSCRCVKDSTLLPPYESSSQGDNQVLLPCPC 532
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -2
Query: 280 SYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTG 155
+Y +LL D + + G +DR + + + + C L H+G
Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 176 NRPCTYRSHCLLPTRQ 129
NRP YRSH + TR+
Sbjct: 323 NRPSNYRSHSSMGTRR 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,573
Number of Sequences: 5004
Number of extensions: 38684
Number of successful extensions: 99
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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