Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1651
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0020 + 13837257-13837281,13837364-13837550,13837655-138377... 131 5e-31
09_06_0344 - 22419152-22419250,22419460-22419554,22419952-224201... 62 4e-10
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270... 51 8e-07
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973... 43 2e-04
03_02_0896 - 12233706-12233801,12234005-12234181,12234741-122348... 29 2.2
01_01_0926 + 7324145-7324561,7324773-7324778,7325255-7325311,732... 29 2.2
07_01_1073 + 9566727-9566963,9566992-9567180 28 6.6
02_05_0095 + 25778461-25778596,25778940-25779069,25780459-25781146 28 6.6
02_02_0053 + 6396442-6396921,6397027-6397122,6397232-6397345,639... 28 6.6
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487... 27 8.7
>09_04_0020 +
13837257-13837281,13837364-13837550,13837655-13837727,
13837769-13837804,13838161-13838281,13838399-13838472,
13838594-13838730,13839262-13839325,13839693-13839758,
13840061-13840130,13840206-13840310,13840840-13840981,
13841343-13841439,13841939-13842460
Length = 572
Score = 131 bits (316), Expect = 5e-31
Identities = 61/118 (51%), Positives = 83/118 (70%), Gaps = 16/118 (13%)
Frame = +3
Query: 225 IKITPLGAGQDVGRSCILLTMGG-KNIMLDCGMHMGYNDERRFPDFSYIVPEGPI--TSQ 395
I+ LGAGQ+VG+SC+++T GG K +M DCGMHMG+ D RR+PDF ++ +G T+
Sbjct: 3 IECLVLGAGQEVGKSCVVVTFGGGKRVMFDCGMHMGHRDSRRYPDFDRLLADGAADYTAA 62
Query: 396 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMT-------------HPTKAIAPILLE 530
I CV+I+HFHLDH GALPY +E+ GY GP+YMT +PTKA+AP++LE
Sbjct: 63 ISCVVITHFHLDHIGALPYFTEVCGYHGPVYMTYYDCAALVYPFQQYPTKALAPLMLE 120
>09_06_0344 -
22419152-22419250,22419460-22419554,22419952-22420108,
22420825-22420869,22421080-22421211,22421496-22421594,
22421690-22421785,22421968-22422149,22422242-22422494,
22422867-22422974,22423037-22423094,22423462-22423613,
22423698-22423792,22424172-22424287,22424369-22424495,
22424565-22424661,22424745-22424913,22425879-22426027
Length = 742
Score = 61.7 bits (143), Expect = 4e-10
Identities = 32/92 (34%), Positives = 47/92 (51%)
Frame = +3
Query: 225 IKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDC 404
+++TPL G C LL + G +LDCG + D D S++ P + ID
Sbjct: 5 VQVTPLSGAYGEGPLCYLLAVDGFRFLLDCG----WTD---LCDPSHLQPLAKVAPTIDA 57
Query: 405 VIISHFHLDHCGALPYMSEMIGYTGPIYMTHP 500
V++SH H GALPY + +G + P+Y T P
Sbjct: 58 VLLSHADTMHLGALPYAMKHLGLSAPVYATEP 89
>02_04_0130 +
20025414-20025531,20026357-20026585,20026909-20027032,
20027441-20027497,20027613-20027804,20027882-20027959,
20028437-20028619,20028715-20028795,20029196-20029228,
20029448-20029513,20029591-20029683,20030106-20030231,
20030395-20030508,20030973-20031068,20031159-20031256,
20031416-20031831,20032025-20032473,20032810-20032905
Length = 882
Score = 50.8 bits (116), Expect = 8e-07
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Frame = +3
Query: 219 PDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDE----RRFPDFSYIVPEGPI 386
P +++ P+G ++G +C+L+ + I++D G+ DE + PD ++I
Sbjct: 79 PPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDFDEFGVQKIIPDTTFIKKW--- 135
Query: 387 TSQIDCVIISHFHLDHCGALPYMSEMIGYTGPIY 488
+ +I+ VII+H H DH GALP++ + + PI+
Sbjct: 136 SHKIEAVIITHGHEDHIGALPWVIPALDSSTPIF 169
>03_06_0716 -
35695158-35696795,35697075-35697288,35697290-35697372,
35697695-35697865
Length = 701
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Frame = +3
Query: 231 ITPLGAGQDVGRSCILLTMGGKNIMLD---CGMHMGYNDERRFPDFSYIVPEGPITSQID 401
ITPLGAG +VGRSC+ ++ G+ ++L C + E P S + + +
Sbjct: 33 ITPLGAGNEVGRSCVYMSFKGRTVLLSLGPCCLSSLLLGEGNVPPSSVFL----LRHKCS 88
Query: 402 CVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILL 527
+ + F + L + + G ++MTH TKAI +LL
Sbjct: 89 AIALIPFSI---LKLLWFYLQTTFKGRVFMTHATKAIYRLLL 127
>03_02_0896 -
12233706-12233801,12234005-12234181,12234741-12234854,
12234928-12235006,12235372-12235533,12235957-12236079,
12236139-12236218
Length = 276
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 393 QIDCVIISHFHLDHCGALPYMSEMI 467
+IDCV+ +H H DH G M++ +
Sbjct: 57 RIDCVLTTHHHWDHAGGNEKMAQSV 81
>01_01_0926 +
7324145-7324561,7324773-7324778,7325255-7325311,
7325572-7325661,7325938-7325982,7326088-7326142,
7326245-7326288,7326401-7326790,7327276-7327541,
7328292-7328430,7328514-7328564,7329158-7329642,
7329724-7330327,7330717-7331025
Length = 985
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +3
Query: 276 LLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVIISHFHLDH 434
L T GG I+LDCG +RRF + + C+ ISH H DH
Sbjct: 661 LFTQGG--ILLDCGEGTLGQLKRRFG----VSGADDAVKSLKCIWISHIHADH 707
>07_01_1073 + 9566727-9566963,9566992-9567180
Length = 141
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 336 RCSPYAYHNLTLCFCHPWLARCSS 265
RC+P Y + C C PW RC S
Sbjct: 113 RCAPVEYQ-MAGCRCAPWRHRCDS 135
>02_05_0095 + 25778461-25778596,25778940-25779069,25780459-25781146
Length = 317
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 230 DYATRSGPGCWSELHLANHGWQKH 301
DY R G GCWS L AN G Q++
Sbjct: 28 DYILRHGHGCWSALP-ANAGLQRN 50
>02_02_0053 +
6396442-6396921,6397027-6397122,6397232-6397345,
6397723-6397791,6397891-6397965,6398262-6398336
Length = 302
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +3
Query: 405 VIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILL 527
+ ISH HLDH G LP M T +Y P P L
Sbjct: 72 LFISHAHLDHIGGLP----MYVATRGLYRQRPPTIFIPACL 108
>03_06_0621 -
35147070-35148359,35148499-35148579,35148665-35148741,
35148792-35149298,35149405-35150278
Length = 942
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 164 NLETYIFISFLGCG 205
N+ETY +++FLGCG
Sbjct: 115 NVETYNYLAFLGCG 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,866,303
Number of Sequences: 37544
Number of extensions: 373804
Number of successful extensions: 742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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