Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1649
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    30   0.57 
05_05_0213 + 23307403-23307573,23308691-23308810                       27   5.3  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    27   7.0  
05_06_0282 + 26915249-26915881                                         27   7.0  

>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -3

Query: 386  PRLWGIIANPNPQHEGVSRGLPGPVGQGEHADSFSVARV-RPRTSKGITDXXXXXXXXLE 210
            P LW +++ P P+++ +  GLPG       AD   + ++ R   S+G T          +
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPG------SADRPKLLKLDRSPLSQGTTKWKKSDRERDQ 1163

Query: 209  DAGPSKKNFNTSS 171
            +   S KN N+ S
Sbjct: 1164 NRDASLKNSNSKS 1176


>05_05_0213 + 23307403-23307573,23308691-23308810
          Length = 96

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -1

Query: 256 LRASQTCYCSISCGSK--TPVPLRRILIRRQ*VARHEAAHT*IT-TPI 122
           LRAS  C CS++ GS+  TP P  +  +R     R EA +T  T TP+
Sbjct: 42  LRASVCCRCSVAAGSQNITPFPDLKFELR----TRQEAKNTLNTCTPL 85


>09_02_0048 -
           3532663-3533475,3534086-3534589,3534715-3535740,
           3536083-3536226,3536974-3537375,3537499-3537721,
           3537830-3542368,3542480-3542599,3543005-3543038,
           3543922-3544102,3544198-3544815,3545022-3551098,
           3551139-3551304,3551508-3551614,3552056-3552178,
           3553417-3553642
          Length = 5100

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 15  INSSFLIRWVVVHGRS*LVERFVWLIPVTN 104
           +N+S L RW ++  R  LV R + L PVT+
Sbjct: 792 VNASGLTRWALLLSRLLLVLRHMLLYPVTH 821


>05_06_0282 + 26915249-26915881
          Length = 210

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 84  RQIAPPTKNGHAPPPTESRKS 22
           RQ+APP   G+ PP T  R++
Sbjct: 156 RQLAPPPPMGNPPPNTHRRRT 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,823,687
Number of Sequences: 37544
Number of extensions: 240270
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)