Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1649
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66521-19|CAA91404.2|  217|Caenorhabditis elegans Hypothetical p...    29   1.5  
AL031269-4|CAA20335.2|  217|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF303256-1|AAG50214.1|  217|Caenorhabditis elegans 2L737 protein.      29   1.5  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    26   8.2  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    26   8.2  

>Z66521-19|CAA91404.2|  217|Caenorhabditis elegans Hypothetical
           protein VW02B12L.4 protein.
          Length = 217

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 377 WGIIANPNPQHEGVSR 330
           WG+IA P PQH+ + R
Sbjct: 29  WGMIARPEPQHDSLKR 44


>AL031269-4|CAA20335.2|  217|Caenorhabditis elegans Hypothetical
           protein VW02B12L.4 protein.
          Length = 217

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 377 WGIIANPNPQHEGVSR 330
           WG+IA P PQH+ + R
Sbjct: 29  WGMIARPEPQHDSLKR 44


>AF303256-1|AAG50214.1|  217|Caenorhabditis elegans 2L737 protein.
          Length = 217

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 377 WGIIANPNPQHEGVSR 330
           WG+IA P PQH+ + R
Sbjct: 29  WGMIARPEPQHDSLKR 44


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 250  PLDVLGRTRATLKESACSPWPTGPGNPRETPSCW 351
            P D+  R  +T +   CS W  GP   +E P  W
Sbjct: 1568 PADIATRGMSTNELQNCSFWFNGPEFLKEPPENW 1601


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 250  PLDVLGRTRATLKESACSPWPTGPGNPRETPSCW 351
            P D+  R  +T +   CS W  GP   +E P  W
Sbjct: 1568 PADIATRGMSTNELQNCSFWFNGPEFLKEPPENW 1601


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,195,332
Number of Sequences: 27780
Number of extensions: 176624
Number of successful extensions: 559
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)