Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1649
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.41 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   0.71 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   5.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.41
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 293  QHVLPGLQARATRVKLLRAG 352
            QHVLPG    A+++KL+  G
Sbjct: 1012 QHVLPGKTLLASQIKLVSPG 1031


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 0.71
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 345 RRSFTRVARACRPGR 301
           RR+F R+  AC PGR
Sbjct: 398 RRAFVRILCACCPGR 412


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 259 VLGRTRATLKESACSPWPTGPGNPRETP 342
           +L R R T   +AC P    P NP   P
Sbjct: 200 ILVRARETPNYTACPPTLACPLNPNPQP 227


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 292 SACSPWPTGPG 324
           +AC  WPTG G
Sbjct: 198 NACRFWPTGRG 208


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 84  RQIAPPTKNGHAPPPTESRKS 22
           RQ+    + GH  PP +  +S
Sbjct: 265 RQLNSDVQPGHGSPPVKQHRS 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,876
Number of Sequences: 438
Number of extensions: 2189
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)