Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1647
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 1.3
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 3.0
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 26 4.0
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 26 4.0
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 4.0
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 5.2
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 6.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 6.9
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 6.9
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 25 9.1
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 9.1
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 25 9.1
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 25 9.1
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 379 YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 507
YL+ +L PN Y Q A + +DY E IRI+E V
Sbjct: 32 YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +1
Query: 265 DTMKLIVNWSGK-EFLRETW---TRFVEDSFPIVNDQEVMDVY 381
D ++ + W K + ++ W T E SFP++ND+E + V+
Sbjct: 230 DDLETLPKWPDKVKKMQRNWIGRTTGFEISFPLLNDKETLTVF 272
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 214 GKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWT 324
G N +TL KEI K NWS ++FL+ W+
Sbjct: 186 GANDIITLEKEIAMFKKKK-----NWSDEQFLQYVWS 217
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 4.0
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Frame = +1
Query: 109 KNAKRKKHLVEHEQEEKQW-DLLD-----NYMVAEDPFLGPGKNQ--KLTLFKEIRSVKP 264
KN + + +V H+ + K+W DL D N + D + +++ L++ I+ + P
Sbjct: 354 KNKAKVQKIVSHKNQRKRWFDLTDVDPYTNLQDSTDNDISESESEGGDLSMSPLIKGLVP 413
Query: 265 DTMKLIVNWS 294
DT+ L ++S
Sbjct: 414 DTLSLSKSFS 423
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 16 PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 159
P+ M + S P+ VY+ + L C NAK + LV+ + EE+
Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = -3
Query: 486 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 388
+D GH + PP+ + +++A + +C ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 6.9
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 70 YDNKYYKNLGCLIK-NAKRKKHLVEHEQEEKQWDLLDNYMVAED 198
Y+ Y L L K + K+ K + +H+ + W LLD +D
Sbjct: 238 YEESNYTRLPKLSKKDLKKSKRVKKHDYGGEDWSLLDRKFHDDD 281
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 344 SPL*TTKR*WTCTSSPTSNPHAPTGATSSSLN 439
SP+ R + + P SNP+ P SS++N
Sbjct: 964 SPVAAASRISSSPNMPPSNPYTPIAVASSTVN 995
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 238 FKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSF 345
F + S+ P +LIVN + + WT +D +
Sbjct: 109 FSSVNSLSPSLFQLIVNRMRFDAIHPEWTNGSDDEY 144
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 9.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 35 IHTPPPSGVLTCTTINITKTW 97
I+ PP + ++TC+T + W
Sbjct: 300 INNPPSNNIVTCSTDGLVHIW 320
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 200 PF*DRAKTKNLPFLKKFAV*NPIP 271
P + +KT+N+P LKKF N P
Sbjct: 1119 PVTNYSKTRNMPSLKKFLTVNQDP 1142
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +1
Query: 40 YTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQ 150
Y PT R Y+ L+KN K HL + Q
Sbjct: 173 YNPTAAREAHGLGMYFLAYEALVKNTMAKHHLTDRSQ 209
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 24.6 bits (51), Expect = 9.1
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 124 KKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPDTMK 276
KKH ++ ++EEK + LD++ P ++ LT F + V P ++K
Sbjct: 120 KKHSLQLQEEEKSSESLDSH--THPPKRVRNEDDSLT-FSKTSPVSPSSLK 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,829
Number of Sequences: 5004
Number of extensions: 50445
Number of successful extensions: 151
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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