Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1645
(461 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 24 0.92
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 22 3.7
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 21 4.9
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 6.5
AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II ... 21 6.5
D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein. 21 8.5
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 21 8.5
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 21 8.5
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 21 8.5
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 8.5
AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly pro... 21 8.5
AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly pro... 21 8.5
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 23.8 bits (49), Expect = 0.92
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 156 FGRFLDNHLGEL 191
FGR++DN LGEL
Sbjct: 622 FGRYVDNLLGEL 633
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 21.8 bits (44), Expect = 3.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 380 ETFHQLTDVTLQRDPE 333
E+FH+LT T DP+
Sbjct: 222 ESFHRLTSNTFDYDPK 237
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.4 bits (43), Expect = 4.9
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +1
Query: 148 KSHSVDFSITISESCS 195
K + +DF I ++E C+
Sbjct: 519 KENEIDFKIEVTEDCN 534
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.0 bits (42), Expect = 6.5
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 368 QLTDVTLQRDPEKRHSASQLLNHAFFKQI 282
+L+ L +P +SAS L+HA + +
Sbjct: 175 KLSQFDLVANPTANYSASTTLSHAEYSML 203
>AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II
protein.
Length = 190
Score = 21.0 bits (42), Expect = 6.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 365 LTDVTLQRDPEKRHSASQLLNHAFFKQIRR 276
L + L +P KR +AS+ L H + Q R
Sbjct: 146 LINQMLTVNPSKRITASEALKHPWICQRER 175
>D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein.
Length = 432
Score = 20.6 bits (41), Expect = 8.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -1
Query: 380 ETFHQLTDVTLQRDPE 333
++FH+LT T DP+
Sbjct: 221 DSFHRLTSNTFDYDPK 236
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 20.6 bits (41), Expect = 8.5
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = -3
Query: 339 PGKKTFGLSTPKPRVLQADPKSGLPARTHRTRQAHQ 232
P + G STP PR + + P+ R HQ
Sbjct: 142 PRFRHIGPSTPFPRFIPPNAYRFRPSLNPRFESTHQ 177
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 20.6 bits (41), Expect = 8.5
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = -3
Query: 339 PGKKTFGLSTPKPRVLQADPKSGLPARTHRTRQAHQ 232
P + G STP PR + + P+ R HQ
Sbjct: 142 PRFRHIGPSTPFPRFIPPNAYRFRPSLNPRFESTHQ 177
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 20.6 bits (41), Expect = 8.5
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = -3
Query: 339 PGKKTFGLSTPKPRVLQADPKSGLPARTHRTRQAHQ 232
P + G STP PR + + P+ R HQ
Sbjct: 142 PRFRHIGPSTPFPRFIPPNAYRFRPSLNPRFESTHQ 177
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 20.6 bits (41), Expect = 8.5
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = -3
Query: 339 PGKKTFGLSTPKPRVLQADPKSGLPARTHRTRQAHQ 232
P + G STP PR + + P+ R HQ
Sbjct: 375 PRFRHIGPSTPFPRFIPPNAYRFRPSLNPRFESTHQ 410
>AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 20.6 bits (41), Expect = 8.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -1
Query: 380 ETFHQLTDVTLQRDPE 333
++FH+LT T DP+
Sbjct: 221 DSFHRLTSNTFDYDPK 236
>AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 20.6 bits (41), Expect = 8.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -1
Query: 380 ETFHQLTDVTLQRDPE 333
++FH+LT T DP+
Sbjct: 221 DSFHRLTSNTFDYDPK 236
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,942
Number of Sequences: 438
Number of extensions: 2080
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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