Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1643
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 168 5e-43
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 80 3e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 76 4e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 5e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 60 2e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 51 1e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 46 3e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 3e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 1e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.7
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.7
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 6.2
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 8.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 168 bits (409), Expect = 5e-43
Identities = 76/85 (89%), Positives = 81/85 (95%)
Frame = -2
Query: 549 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 370
KDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLS
Sbjct: 291 KDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLS 350
Query: 369 TFQQMWISKQEYDESGPSIVHRKCF 295
TFQQMWISKQEYDESGP IV+RKCF
Sbjct: 351 TFQQMWISKQEYDESGPGIVYRKCF 375
Score = 35.5 bits (78), Expect = 0.006
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -1
Query: 589 TYNSIMKCDVDIRKGL 542
TYNSIMKCDVDIRK L
Sbjct: 278 TYNSIMKCDVDIRKDL 293
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 79.8 bits (188), Expect = 3e-16
Identities = 36/83 (43%), Positives = 59/83 (71%)
Frame = -2
Query: 543 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 364
LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 363 QQMWISKQEYDESGPSIVHRKCF 295
+++ I+ +EY ++ +++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 75.8 bits (178), Expect = 4e-15
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 6/88 (6%)
Frame = -2
Query: 543 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 373
L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 372 STFQQMWISKQEYDESGP---SIVHRKC 298
TF Q+WIS+QEY+E G +++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.1 bits (169), Expect = 5e-14
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = -2
Query: 543 LYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 370
L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 369 TFQQMWISKQEYDESG 322
FQ +W+SKQEYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 60.1 bits (139), Expect = 2e-10
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 12/88 (13%)
Frame = -2
Query: 549 KDLYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSV 403
K LY VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V
Sbjct: 291 KYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAV 350
Query: 402 WIGGSILAS-LSTFQQMWISKQEYDESG 322
+IGG++LA ++ MW+SK E++E G
Sbjct: 351 FIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 50.8 bits (116), Expect = 1e-07
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Frame = -2
Query: 549 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERK 412
K LY N VLSGG+T++ +R+Q+++ + + + +I+ ++
Sbjct: 324 KGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQR 383
Query: 411 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 304
+VW GGS+LA F +K +Y+E G SI R
Sbjct: 384 NAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 46.4 bits (105), Expect = 3e-06
Identities = 25/81 (30%), Positives = 40/81 (49%)
Frame = -2
Query: 543 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 364
L N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377
Query: 363 QQMWISKQEYDESGPSIVHRK 301
I++ EY E G +I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = -2
Query: 543 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 364
L +N +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 363 QQMWISKQEYDESGPSIV 310
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 549 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 379
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 378 SLSTFQQMWISKQEYDESGPSIVHRK 301
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 402 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 301
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 410 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 315
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 477 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 367
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 6.2
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 520 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 341
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 340 GV 335
V
Sbjct: 534 AV 535
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 343 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 429
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,734
Number of Sequences: 5004
Number of extensions: 40594
Number of successful extensions: 131
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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